Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0606
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    26   0.33 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    24   1.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.1  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   5.4  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 562 ITKLTKPKLRRYLKWLVKYVTLIWLLIKTVIVEDLLSLSMTTH*SRTGYS 711
           ITK  K  ++R  + ++ YV+L+WL    + +  LL +      S TG S
Sbjct: 143 ITKPLKYGVKRTPRRMIVYVSLVWLGAACISLPPLLIMGNEHTYSETGPS 192


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 340 RKLVLKEETGNERRMHTS--RPQHREGRNNRDDKDNWGINKP 459
           R+  L+ E GN R ++ S  RP H   R   + +   G N+P
Sbjct: 89  REAELEAEPGNNRPVYISQPRPPHPRLRREAEPEAEPGNNRP 130



 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 340 RKLVLKEETGNERRMHTS--RPQHREGRNNRDDKDNWGINKP 459
           R+  L+ E GN R ++ S  RP H   R   + +   G N+P
Sbjct: 145 REAELEAEPGNNRPVYISQPRPPHPRLRREAEPEAEPGNNRP 186


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 565 TKLTKPKLRRYLKWLVKYVTLIWLLIKTVIVEDLLSLSMTTH 690
           T LT P L +YL + +  VTL   ++ T+ V ++   S  TH
Sbjct: 292 TSLTVPLLGKYLLFTMVLVTL--SVVVTIAVLNVNFRSPVTH 331


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 340 RKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKP 459
           R+   + E GN R ++  +P+    R  R+ +   G N+P
Sbjct: 90  REAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRP 129



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 361 ETGNERRMHTSRPQHREGRNNRDDKDNWGINKP 459
           E GN R ++  +P+    R  R+ +   G N+P
Sbjct: 123 EPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRP 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,410
Number of Sequences: 438
Number of extensions: 4128
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)