Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0605
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    28   1.7  
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ...    27   2.3  
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces...    27   3.9  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    26   5.2  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    26   6.9  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    26   6.9  

>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 424 NKRNEITNGSVISSTNEGNTTPEDRHSPEM*AL 522
           ++  E++ GSVIS   + N  PE+   PE+ AL
Sbjct: 369 SQSTELSQGSVISKAKKLNVRPEELKLPEITAL 401


>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 311

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 522 PMLSIQTLLNN-SSITSRNIRTGRVSKRKTVGD 617
           P  +++   N+     +R ++TGRV KRK +G+
Sbjct: 238 PKAALEASQNSWKQFAARGVKTGRVGKRKKIGE 270


>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 367 KTSKRVS-RNTKSLLSNATFNKRNEITNGSVISSTNEGNT 483
           K ++R+  RN  + + +++ N +N +TN  +    N+G T
Sbjct: 8   KEARRLQKRNLNNAIGSSSINSQNSLTNDKIGKGKNKGPT 47


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -1

Query: 216 IELLEWSVSLPDTP---GL-DRDRFDINEHPDLVDLATYGVLVP 97
           +ELLE S    D     GL      +++EHP LVDL +  + VP
Sbjct: 376 LELLERSADTADADVPSGLYSHALVNLHEHPGLVDLGSENIRVP 419


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -1

Query: 162 DRFDINEHPDLVDLATYGVLVPSNVGSIVDLVFLEMLLPGVPNESLADATES 7
           D   ++E P   D A   +    NVG++ D+  L + LPG    ++ D T++
Sbjct: 321 DIIKLSESPQ--DAANNIIRYAQNVGAVDDITCLVVRLPGWKKRTINDFTKN 370


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +2

Query: 20  SASDSFGTPGNSISRKTRSTIDPTLLGTSTPYVAKSTRSGCS 145
           SAS S  T  N+     + T  PT L T+ P    S RS CS
Sbjct: 398 SASYSLFTSSNATYSGEQKTYSPTTLSTNAPPSPSSGRS-CS 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,289
Number of Sequences: 5004
Number of extensions: 56551
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)