Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0605
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0190 + 9485701-9485806,9487182-9487368,9489662-9489733,949... 32 0.44
07_03_0714 + 20885468-20885473,20885625-20885715,20886469-208865... 31 1.0
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 29 3.1
08_02_1547 + 27795664-27795674,27795743-27795892,27796182-277979... 28 7.2
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 28 7.2
06_03_0416 + 20568087-20568702,20568767-20570313 28 9.5
03_05_0741 + 27287414-27287479,27287887-27287946,27288949-272891... 28 9.5
>05_03_0190 +
9485701-9485806,9487182-9487368,9489662-9489733,
9490089-9490160,9490514-9490585,9490845-9490916,
9491355-9491426,9491503-9491577,9492008-9492073,
9492144-9492188,9492276-9492340,9492429-9492811,
9492878-9493076,9493150-9493308,9493386-9493504,
9493652-9493862,9493993-9494224,9494307-9494457,
9494550-9494870
Length = 892
Score = 32.3 bits (70), Expect = 0.44
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +2
Query: 23 ASDSFGTPGNSISRKTRSTIDPTLLGTSTPYVAKSTRSGCSFISNRSRSNPGV 181
A D S S T DPT LGT+ YV TR G S + N + G+
Sbjct: 306 AVDCGSNSSTSASDNTIFEADPTSLGTAAYYVTSQTRWGVSSVGNFFQGTNGM 358
>07_03_0714 +
20885468-20885473,20885625-20885715,20886469-20886537,
20887142-20887251,20887694-20887786
Length = 122
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = -1
Query: 243 VNDFDRLVDIELLEWSVSLPDTPGLDRDRFDINEHPDLVDLA--TYGVLVPSNVGSIVDL 70
+ D ++ +L + + PDTPGL F + +V +A T+G ++ NVG++VDL
Sbjct: 10 IEDLEKDTGYKLRVLAQNYPDTPGLAIKDFWQVDDQTIVFVADPTFGNIINFNVGALVDL 69
>01_03_0256 + 14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = -1
Query: 363 RRIFLVVNE*VAVINPGSTSGNSRYFRTVDRDMFSGVSGVVNDFDRLVDIELLEWSVSLP 184
+RI + N NP ++ G R +DR G + + +RL D +L+ LP
Sbjct: 1387 KRIVIFGNTLRKETNPDTSMGIMRMKTYLDRSQPLGRFRIPVEAERLRDNDLVLEQYLLP 1446
Query: 183 DTPGLDRDRFD 151
+TPG+ R D
Sbjct: 1447 NTPGIAGFRLD 1457
>08_02_1547 +
27795664-27795674,27795743-27795892,27796182-27797906,
27799447-27799546,27799657-27800268,27800399-27800521,
27800905-27801039,27801108-27801209,27801716-27801778,
27801854-27802045,27802121-27802258,27802632-27802694,
27803068-27803466
Length = 1270
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 627 CAQYLLQSCVSILCLF-ECSLM*SSCYLKEFECLTLECLHLGTM 499
C + + + C + E SL SC K+ EC +L C H+ T+
Sbjct: 431 CMKGKIDKITILTCSYVESSLKNMSCTCKKMECESLPCQHMFTI 474
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -2
Query: 716 SVNLSSTLEQPLIALTFNDFDFKPARLFLTVPNISY 609
SV L + PL+A+ ++ A++ ++PN+SY
Sbjct: 437 SVMLENISRTPLVAIATTSAVYRTAQIITSIPNLSY 472
>06_03_0416 + 20568087-20568702,20568767-20570313
Length = 720
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -1
Query: 252 SGVVNDFDRLVDIELLEWSVSLPDTP-GLDRDRFDINEHPDLVDLATYGVLVPSNVGSIV 76
+G + F + + ++ + LP+ GL+ R D + H L Y VPS++ I
Sbjct: 212 NGSLEVFTSFQETKAPDYHIQLPENSFGLEFARLDWDGHMRLYQWINYSAWVPSDIFDIT 271
Query: 75 D 73
D
Sbjct: 272 D 272
>03_05_0741 +
27287414-27287479,27287887-27287946,27288949-27289112,
27289158-27289241,27290115-27290178,27291181-27291334,
27291605-27291675,27292138-27292242,27292734-27292826,
27293672-27293746,27294114-27294199,27294293-27294499,
27294585-27294684,27294765-27294835,27294960-27295041,
27295920-27296078,27296480-27296533,27296775-27296817,
27297630-27297712,27298569-27298631,27298720-27298794,
27299620-27299745,27300267-27300499,27300611-27300655,
27300953-27301019,27302095-27302166,27302276-27302520,
27302598-27302655,27302743-27302910,27303224-27303298,
27303412-27303669
Length = 1101
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -1
Query: 165 RDRFDINEHPDLVDLATYGVL--VPSNVGSIVDLVFLEMLLPG--VPNE 31
+DRFDI + PD+ D Y +L N+ + +L + LL +PNE
Sbjct: 772 KDRFDITQIPDVYDSCKYDLLHNAHLNLEGLEELFKVAQLLADGVIPNE 820
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,036,321
Number of Sequences: 37544
Number of extensions: 329651
Number of successful extensions: 819
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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