Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0605
         (774 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36995| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.34 
SB_40488| Best HMM Match : HEAT (HMM E-Value=6.3e-08)                  28   7.3  

>SB_36995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = -2

Query: 482 VFPSLVELITLPFVISFLLLNVAFDNKDLVLRLTLFEVF 366
           VFPSL  +IT+P V + +L+NV     D+++ + +  +F
Sbjct: 71  VFPSLFFIITIPDVDNIILINVVVITVDIIVIIVIIIIF 109


>SB_40488| Best HMM Match : HEAT (HMM E-Value=6.3e-08)
          Length = 1185

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = -1

Query: 351  LVVNE*VAVINPGSTSGNSRYFRTVDRDMFSGVSGVVNDFDRLVDIELLEWSVS 190
            LVVN  V   +P +  G S  +R      FSG S  V DF  ++ ++LL+ ++S
Sbjct: 964  LVVNRLVNSHDPCAV-GISPNYRMKGNQRFSGNSSFVEDFSDMLLLKLLDLAIS 1016


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,662,777
Number of Sequences: 59808
Number of extensions: 420704
Number of successful extensions: 1160
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)