Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0605
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46669-3|AAA85744.2|  737|Caenorhabditis elegans Regulator of g ...    29   3.7  
AL034393-22|CAD36499.1|  655|Caenorhabditis elegans Hypothetical...    29   4.9  
AL034393-21|CAA22320.2|  681|Caenorhabditis elegans Hypothetical...    29   4.9  
AF497833-1|AAM18111.1|  655|Caenorhabditis elegans putative Na-H...    29   4.9  
AF497832-1|AAM18110.1|  681|Caenorhabditis elegans putative Na-H...    29   4.9  
Z92813-7|CAB07283.2|  758|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>U46669-3|AAA85744.2|  737|Caenorhabditis elegans Regulator of g
           protein signalingprotein 6 protein.
          Length = 737

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 11  SVASASDSFGTPGNSISRKTRSTIDPTLLGTSTPYVAKSTRSGCS 145
           + A AS S   P  S S +T++T  PT   TST      T +  +
Sbjct: 648 AAAGASPSTSAPSTSTSVQTKTTTSPTKSPTSTTITTSGTTTSAT 692


>AL034393-22|CAD36499.1|  655|Caenorhabditis elegans Hypothetical
           protein Y18D10A.6b protein.
          Length = 655

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2

Query: 74  ISFS*RCYYREYQTSRSRTPQN 9
           ISF  RCY  E Q  R RTP+N
Sbjct: 491 ISFINRCYPNERQRKRRRTPRN 512


>AL034393-21|CAA22320.2|  681|Caenorhabditis elegans Hypothetical
           protein Y18D10A.6a protein.
          Length = 681

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2

Query: 74  ISFS*RCYYREYQTSRSRTPQN 9
           ISF  RCY  E Q  R RTP+N
Sbjct: 517 ISFINRCYPNERQRKRRRTPRN 538


>AF497833-1|AAM18111.1|  655|Caenorhabditis elegans putative Na-H
           exchanger isoform 8b protein.
          Length = 655

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2

Query: 74  ISFS*RCYYREYQTSRSRTPQN 9
           ISF  RCY  E Q  R RTP+N
Sbjct: 491 ISFINRCYPNERQRKRRRTPRN 512


>AF497832-1|AAM18110.1|  681|Caenorhabditis elegans putative Na-H
           exchanger isoform 8a protein.
          Length = 681

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2

Query: 74  ISFS*RCYYREYQTSRSRTPQN 9
           ISF  RCY  E Q  R RTP+N
Sbjct: 517 ISFINRCYPNERQRKRRRTPRN 538


>Z92813-7|CAB07283.2|  758|Caenorhabditis elegans Hypothetical
           protein T28A8.7 protein.
          Length = 758

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 464 ELITLPFVISFLLLNVAFDNKDLVLRLTLFEVFGD 360
           +L  LPF+I+ L+LNV +D++    R T+    GD
Sbjct: 656 QLEKLPFLIATLVLNVDYDDEQNTFR-TICRAIGD 689


>Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical
           protein F01G10.10 protein.
          Length = 562

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = -1

Query: 279 VDRDMFSGVSGVVNDFDRLVDIELLEWSVSLPDTPGLDRDRFDINEHPDLVDLATYGVLV 100
           VD+D FS +     +F   +  E+L+  ++LP   G+      +  H   + ++TY  L 
Sbjct: 483 VDQDSFSDLGLFGAEFLEKLLTEILQMGIALPTMQGVILKSPKLTFHDRYLKVSTYFKLD 542

Query: 99  PSNVGSIV 76
               GS+V
Sbjct: 543 EEYAGSLV 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,072,363
Number of Sequences: 27780
Number of extensions: 310576
Number of successful extensions: 899
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)