Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0605
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   4.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   4.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   7.3  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   9.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   9.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   9.6  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 521 SAYISGLCLSSGVVFPSLVELITLPFVISFLLLNV 417
           S + S +  S+GV FP      +LP+   +  LNV
Sbjct: 295 SGFYSTIMYSNGVTFPQRNRFSSLPY-YKYKYLNV 328


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 521 SAYISGLCLSSGVVFPSLVELITLPFVISFLLLNV 417
           S + S +  S+GV FP      +LP+   +  LNV
Sbjct: 295 SGFYSTIMYSNGVTFPQRNRFSSLPY-YKYKYLNV 328


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 199 PLKEFYVHKTIEVIDHTRN 255
           P+KEF+  +T+++ D   N
Sbjct: 183 PVKEFWERRTLQISDGIEN 201


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 199 PLKEFYVHKTIEVIDHTRN 255
           P+KEF+  +T+++ D   N
Sbjct: 236 PVKEFWERRTLQISDGIEN 254


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 439 ITNGSVISSTNEGNTTP 489
           ++ GSV+ +T E NT P
Sbjct: 440 VSGGSVLRATKEYNTVP 456


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 439 ITNGSVISSTNEGNTTP 489
           ++ GSV+ +T E NT P
Sbjct: 440 VSGGSVLRATKEYNTVP 456


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 439 ITNGSVISSTNEGNTTP 489
           ++ GSV+ +T E NT P
Sbjct: 440 VSGGSVLRATKEYNTVP 456


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 674 LTFNDFDFKPARLFLTVPNISYSL 603
           LT N FD+ P    LTV   S+++
Sbjct: 229 LTSNTFDYDPRYTKLTVAGESFTV 252


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 674 LTFNDFDFKPARLFLTVPNISYS 606
           LT N FD+ P    +T+   SY+
Sbjct: 226 LTSNTFDYDPKFTKMTIDGESYT 248


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 674 LTFNDFDFKPARLFLTVPNISYS 606
           LT N FD+ P    +T+   SY+
Sbjct: 226 LTSNTFDYDPKFTKMTIDGESYT 248


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 674 LTFNDFDFKPARLFLTVPNISYS 606
           LT N FD+ P    +T+   SY+
Sbjct: 226 LTSNTFDYDPKFTKMTIDGESYT 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,020
Number of Sequences: 438
Number of extensions: 3961
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)