Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0604
         (659 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        26   0.24 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   5.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   6.8  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   6.8  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   9.0  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 151 HTLVGHEDWVRGLDVLEVDNDTIIV 225
           H LVG E   +G+  +E+++DT+ V
Sbjct: 132 HNLVGREGCKKGVCTMEINSDTMCV 156


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -1

Query: 428 RTIKTIRMPLYPIDPGFMTGKHCLKFHRPKIVICMEHFFLNLNQ 297
           ++ K +  P   + P  +     LK   PK+ +CM++  +N +Q
Sbjct: 580 KSAKPMLKPWQRVLPDGVFVAFLLKHIVPKLQLCMQNLVINPHQ 623


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +2

Query: 23  LYILVYVSPFTRKYYHAQINRYYFVHWMTTKYIY--SLVRTITERILWLDTKTG 178
           ++IL  +     + YH +I +YY + +     +Y  S +  I   ++    +TG
Sbjct: 308 VFILWIILVPEEQVYHLEIEKYYNILYFCRIMVYLNSAINPILYNLMSSKFRTG 361


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 177 PVFVSNQSMRSVIVLTNEYM 118
           PVF+   S ++V  + N+Y+
Sbjct: 16  PVFIGKGSKKTVFDIPNDYL 35


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 324 HAYDNLWSVKLEAVLAGHEAWVYGVQWHPYSFD 422
           +++DN  S  ++  L   E   Y   W+  SFD
Sbjct: 205 YSFDNQCSGTIDWALPKQEDCFYQEGWNGQSFD 237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,362
Number of Sequences: 336
Number of extensions: 3704
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)