Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0604
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 49 7e-07
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 33 0.036
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 32 0.064
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 31 0.11
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 31 0.15
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 30 0.34
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 29 0.59
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 29 0.78
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 28 1.0
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 28 1.4
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 27 1.8
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 27 1.8
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 27 1.8
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 2.4
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 27 2.4
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 27 2.4
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 27 3.2
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 26 4.2
SPBC16A3.16 |||mitochondrial inner membrane protein involved in ... 26 5.5
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 25 7.3
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 25 9.7
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb... 25 9.7
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 25 9.7
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 48.8 bits (111), Expect = 7e-07
Identities = 23/53 (43%), Positives = 34/53 (64%)
Frame = +3
Query: 348 VKLEAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDSSS 506
+ +A+L GHE WV V WH PTK+ +LSSS D ++I+WEPD+++
Sbjct: 258 IVFDALLMGHEDWVMSVDWH------PTKE---MILSSSADSSMIVWEPDTNT 301
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +1
Query: 157 LVGHEDWVRGLDVLEVDNDTIIVASASQDTYIR 255
L GH DWVR L + T +AS SQD YIR
Sbjct: 187 LRGHLDWVRTLSFKKTSGSTATLASGSQDRYIR 219
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 33.1 bits (72), Expect = 0.036
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 76 NKPLLLCALDDHKIHIF-VGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQD 243
N LL A D + ++ + Y R HTL GHED V GL+ +D I+AS+S D
Sbjct: 293 NDYLLATASADKTVALWDLRNPYQRLHTLEGHEDEVYGLE--WSPHDEPILASSSTD 347
Score = 32.7 bits (71), Expect = 0.048
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 366 LAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWE 491
L GHE VYG++W P+ +P+ L SSS D+ + IW+
Sbjct: 321 LEGHEDEVYGLEWSPHD------EPI--LASSSTDRRVCIWD 354
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 357 EAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDSSSTT 512
+AVL GH A +G+ W+P + G L + + D+ + +W+ + S T
Sbjct: 175 QAVLKGHTAEGFGLCWNP-NLPG-------NLATGAEDQVICLWDVQTQSFT 218
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 32.3 bits (70), Expect = 0.064
Identities = 25/56 (44%), Positives = 27/56 (48%)
Frame = +3
Query: 321 FHAYDNLWSVKLEAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIW 488
F A N W LE LAGH W V W P G TK Y L S+S DK + IW
Sbjct: 188 FDAGVNNWI--LEDTLAGHVDWTRDVAWAPSV--GLTK--TY-LASASQDKNVFIW 236
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 31.5 bits (68), Expect = 0.11
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 339 LWSVKLEAV--LAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDSSSTT 512
+WSV V L GH+ VY + + P S LLS SLDKT+ +WE ++ +
Sbjct: 469 VWSVSGTLVERLEGHKESVYSIAFSPDSSI---------LLSGSLDKTIKVWELQATRSV 519
Query: 513 KVSG*RRSGWAK 548
+S + G K
Sbjct: 520 GLSAIKPEGICK 531
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 31.1 bits (67), Expect = 0.15
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 351 KLEAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWE 491
KL A GH++WV V + + D YR+ S LD+ L++W+
Sbjct: 397 KLVARCQGHKSWVTDVIFDAWRCDDDN----YRIASVGLDRKLLLWD 439
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 29.9 bits (64), Expect = 0.34
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Frame = +3
Query: 264 IQKVKAQPESKLIKV--EEKVFHAYDNLWSVKLEAVLAGHEAWVYGVQWHPYSFDGPTKK 437
++ V P S L+ + K+ YD L ++ L GH AW++ V ++P
Sbjct: 190 VRSVAFSPGSTLLAAAGDSKMITIYDVLSGDQV-GQLRGHAAWIFAVAFNPVG------- 241
Query: 438 PVYRLLSSSLDKTLIIWEPDSSSTTKVSG*RRSGWAKWEAEAWVSTGAVL 587
LLS+ ++ + IW+ D+ +S + A W A AW G ++
Sbjct: 242 --DLLLSADVEGKIKIWDIDTMEC--ISTQSETDGAIW-AVAWYKNGFIV 286
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 29.1 bits (62), Expect = 0.59
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 115 IHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYI-RCGRYKRSKHN 285
+++F + +H L+ + RGLD+ VD A S D Y+ R GR R+ HN
Sbjct: 486 LNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHN 543
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 28.7 bits (61), Expect = 0.78
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Frame = +3
Query: 255 LWKIQKVKAQPESKLIKVEEKVFHAYDNLWSVKLEAVL--AGHEAWVYGVQWHPYSFDGP 428
+WK+ + + E+ L + + + + E VL GH A V + W F
Sbjct: 212 VWKVIETPERRETLLKEGPQSCGRFFTPSSIFEPEPVLECVGHNAEVLSISWSKNDF--- 268
Query: 429 TKKPVYRLLSSSLDKTLIIWEPDSSSTTKV 518
LL+SS D+T+ +W P S+ + V
Sbjct: 269 -------LLTSSADRTVRLWHPKSTKSLAV 291
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 354 LEAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIW 488
L A L GH WV + P + D LLS S DK++I+W
Sbjct: 7 LRATLEGHSGWVTSLSTAPENPD--------ILLSGSRDKSIILW 43
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 432 KKPVYRLLSSSLDKTLIIWEPDSSSTTKV 518
K P L ++ DKTL +WE + SS KV
Sbjct: 231 KNPTSELPTNYSDKTLTLWENELSSMRKV 259
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +1
Query: 79 KPLLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIR 255
+PL + DD+K++++ + +L GH D+VR V ++ + S S D IR
Sbjct: 65 QPLFVSGGDDYKVNVWNYKSRKLLFSLCGHMDYVR---VCTFHHEYPWILSCSDDQTIR 120
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 27.5 bits (58), Expect = 1.8
Identities = 22/61 (36%), Positives = 27/61 (44%)
Frame = +3
Query: 366 LAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDSSSTTKVSG*RRSGWA 545
L GHE VY V + P DG L+S SLD T+ +WE S S + G
Sbjct: 454 LHGHEESVYSVAFSP---DGKY------LVSGSLDNTIKLWELQCVSNVAPSMYKEGGIC 504
Query: 546 K 548
K
Sbjct: 505 K 505
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +3
Query: 345 SVKLEAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIW 488
S K++ L GHE V+ V W P DG R+ S DK + IW
Sbjct: 462 SKKMKFDLPGHEDQVFAVDWSP---DG------QRVASGGADKAVRIW 500
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 339 LWSVKLEAVL---AGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWE 491
+W+VKL +L +GH A + V+W ++ + SSS DKT+ IW+
Sbjct: 253 IWNVKLRTLLFTLSGHTAPITCVRWGGQNW----------IYSSSYDKTIRIWD 296
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +3
Query: 360 AVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDSSS 506
A + GH WV V W P D + + S+D T+ W+P S
Sbjct: 171 ATMKGHTNWVSCVAWAP---DASI------IATGSMDNTIRFWDPKKGS 210
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 369 AGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEP 494
AGH A + + W +F LLSSS+DKT +W P
Sbjct: 306 AGHTADILDLSWSRNNF----------LLSSSMDKTARLWHP 337
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 354 LEAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDSSSTTKV 518
LEA L GH+ V+ V+ H + L+S S+DKT+ +W + + T +
Sbjct: 383 LEARLEGHKEGVWAVKIHENT-----------LVSGSIDKTVRVWNIEKAKCTHI 426
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = -3
Query: 243 ILRSRRYDNCVVINFQHVKSPNPVFVSNQSMRSVIVLTNEYMYFVV 106
++++ RYDN + + + SP +F+ N+++ S + + Y Y VV
Sbjct: 373 LVQALRYDNPISSDERFQPSPLALFLVNRAISSPSIGNDLYWYLVV 418
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +3
Query: 393 GVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDSS 503
G Y FDG T VY + + I W PDSS
Sbjct: 208 GADGKVYVFDGKTGDQVYEIDAHKGSIFSISWSPDSS 244
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 26.2 bits (55), Expect = 4.2
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Frame = -1
Query: 410 RMPLYPID-PGFMTGKHC-----------LKFHRPKIVICMEHFFLNLNQFGLRLCFDLL 267
RMP +PID P ++G+ C K P + + F N ++ G C D +
Sbjct: 510 RMPFFPIDYPDTISGQLCEEERKKRNEDSWKRRPPAKRVNYQKFGDNFSEIGNPFCCDWV 569
Query: 266 YLPQRMYVS*EADATI 219
YL + + S + D T+
Sbjct: 570 YLNEMVKASRDEDKTL 585
>SPBC16A3.16 |||mitochondrial inner membrane protein involved in
cytochrome c oxidase assembly Pet191
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 85
Score = 25.8 bits (54), Expect = 5.5
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 277 LTFCIFHSECMYLEKPTLR 221
L C+ HS+CM+++K + R
Sbjct: 12 LANCLLHSDCMFVKKKSAR 30
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 25.4 bits (53), Expect = 7.3
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +1
Query: 13 QSISLHSGLCLTLHAQILPCANKPLLLCALDDHKIHIFVGEDYH-RAHTLVGHEDWVRGL 189
+S+ HSG +H+ N +L D I ++ + + R HTL GHED V +
Sbjct: 275 RSVHAHSG---PIHSVAFNPHNDFILATCSTDKTIALWDLRNLNQRLHTLEGHEDIVTKI 331
Query: 190 DVLEVDNDTIIVASASQDTYI 252
+ + SA + T +
Sbjct: 332 SFSPHEEPILASTSADRRTLV 352
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 172 LRVQPEYALCDSPHQRIYVFCG 107
+ ++PEY L D +YV CG
Sbjct: 114 MEIKPEYLLPDRHINEVYVSCG 135
>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 377 MTGKHCLKFHRPKI 336
+TG H LK HRP I
Sbjct: 3 LTGAHMLKIHRPSI 16
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 181 RGLDVLEVDNDTIIVASASQDTYIR 255
R ++ ++V D I+ASASQD I+
Sbjct: 466 RDVNAIQVSKDGRIIASASQDKTIK 490
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 450 LLSSSLDKTLIIWEPDSSSTTKV-SG*RRSGWA 545
+ S+S DKT+ +W+ + V G RR WA
Sbjct: 480 IASASQDKTIKLWDSSTGEVVGVLRGHRRGVWA 512
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,905,296
Number of Sequences: 5004
Number of extensions: 61383
Number of successful extensions: 245
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -