Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0604
(659 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical... 38 0.006
Z69664-1|CAA93514.1| 325|Caenorhabditis elegans Hypothetical pr... 34 0.078
Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical pr... 33 0.24
AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein. 33 0.24
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 32 0.31
Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical pr... 31 0.55
AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore... 30 1.3
EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long is... 29 2.2
AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobuli... 29 2.2
AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhes... 29 2.2
AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical... 29 2.9
AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore... 29 2.9
Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical p... 28 5.1
Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical pr... 28 5.1
U53141-4|AAA96106.1| 528|Caenorhabditis elegans Mutator protein... 27 8.9
AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical... 27 8.9
>AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical
protein Y111B2A.17 protein.
Length = 778
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +1
Query: 133 EDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRCGRYKRSKHNRSPN 297
+ + R ++ GH DW+ + + D ++VASA QDTY+R + +S N
Sbjct: 195 KSFSRLISVAGHTDWIHSI-AFNDNPDHLLVASAGQDTYVRLWAIEPETDEKSEN 248
Score = 32.7 bits (71), Expect = 0.24
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = +3
Query: 360 AVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWE 491
AV+ GH+ WV+ W S DG LL++S DKT IIW+
Sbjct: 281 AVMQGHDDWVHSTVW---SNDGRV------LLTASSDKTCIIWK 315
>Z69664-1|CAA93514.1| 325|Caenorhabditis elegans Hypothetical
protein K04D7.1 protein.
Length = 325
Score = 34.3 bits (75), Expect = 0.078
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 348 VKLEAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDS 500
+KL L GH WV + + T+ +LSSS DKT+++W+ DS
Sbjct: 6 MKLTGTLEGHTGWVTQIATY-------TRNDKTTVLSSSRDKTILVWDVDS 49
>Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical
protein T03F6.5 protein.
Length = 404
Score = 32.7 bits (71), Expect = 0.24
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +1
Query: 88 LLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQD 243
+L A DH I + + +T GH DWVR ++ + ND + ASAS D
Sbjct: 206 VLSASRDHTIKQWDISTGYCVYTFRGHNDWVR---MIRISNDGTLFASASLD 254
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +3
Query: 366 LAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWE 491
L HE WV G+ +HP K Y L+S + DKTL +WE
Sbjct: 328 LLAHENWVRGLAFHP--------KGKY-LISVADDKTLRVWE 360
>AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein.
Length = 404
Score = 32.7 bits (71), Expect = 0.24
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +1
Query: 88 LLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQD 243
+L A DH I + + +T GH DWVR ++ + ND + ASAS D
Sbjct: 206 VLSASRDHTIKQWDISTGYCVYTFRGHNDWVR---MIRISNDGTLFASASLD 254
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +3
Query: 366 LAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWE 491
L HE WV G+ +HP K Y L+S + DKTL +WE
Sbjct: 328 LLAHENWVRGLAFHP--------KGKY-LISVADDKTLRVWE 360
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/41 (46%), Positives = 21/41 (51%)
Frame = -2
Query: 649 KSPNVKRAIVTMSQEGHTFWSKTAPVETQASASHFAHPDLL 527
K P K A V SQE H FW K P++ S SH DLL
Sbjct: 1133 KEPRWKAAGV--SQEEHDFWIKNKPLQDIVSKSHAMVKDLL 1171
>Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical
protein C29E6.4 protein.
Length = 906
Score = 31.5 bits (68), Expect = 0.55
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = -2
Query: 646 SPNVKRAIVTMSQEGHTFWSKTAP---VETQASASHFAHPDLLYPD--TFVVLLESGSQI 482
S K T+S E + F+ ++ P +S+S HP LYP+ T L+E G Q+
Sbjct: 321 SSTSKSISATVSDENYDFYERSCPYIPTSPTSSSSFIPHPPTLYPEVVTRYKLMERGRQL 380
>AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform a protein.
Length = 313
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 375 HEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDSSS 506
HE V V W P S D KK RL+S+ DK + IW D ++
Sbjct: 151 HEQGVNSVCWAPGSADPAAKK---RLVSAGNDKNVKIWAFDDAT 191
>EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long isoform
protein.
Length = 1187
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +3
Query: 438 PVYRLLSSSLDKTLIIWEPDSSSTTKVSG 524
P++R+ + SLD ++ W+P++ S K+ G
Sbjct: 1019 PIFRVKNISLDSFVVEWQPNNHSVWKMPG 1047
>AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobulin
domain-containingprotein Y54G2A.25 protein.
Length = 1187
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +3
Query: 438 PVYRLLSSSLDKTLIIWEPDSSSTTKVSG 524
P++R+ + SLD ++ W+P++ S K+ G
Sbjct: 1019 PIFRVKNISLDSFVVEWQPNNHSVWKMPG 1047
>AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhesion
molecule homologprotein 2, isoform a protein.
Length = 1187
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +3
Query: 438 PVYRLLSSSLDKTLIIWEPDSSSTTKVSG 524
P++R+ + SLD ++ W+P++ S K+ G
Sbjct: 1019 PIFRVKNISLDSFVVEWQPNNHSVWKMPG 1047
>AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical
protein Y41C4A.11 protein.
Length = 386
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 79 KPLLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTI-IVASASQDTYIR 255
K + A DD +I IF E + + H D++R L V + T+ + SAS D IR
Sbjct: 161 KNWIATASDDQQIRIFDAETFSLINEFTAHSDFIRSLTV----HPTLPYLISASDDRKIR 216
>AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform b protein.
Length = 211
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +3
Query: 375 HEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIW 488
HE V V W P S D KK RL+S+ DK + IW
Sbjct: 151 HEQGVNSVCWAPGSADPAAKK---RLVSAGNDKNVKIW 185
>Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical
protein D2030.9b protein.
Length = 530
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 88 LLCALDDHKIHIFVGEDYHRAHTLV-GHEDWVRGLDVLEVDNDTIIVASASQDTYIR 255
++C + IH+F E R T+V HED V V D + ++ SA D ++
Sbjct: 242 IVCGTSQYSIHVFDVEQRRRIRTIVNAHEDDVN--SVCFADLGSNLIYSAGDDGLVK 296
>Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical
protein D2030.9a protein.
Length = 571
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 88 LLCALDDHKIHIFVGEDYHRAHTLV-GHEDWVRGLDVLEVDNDTIIVASASQDTYIR 255
++C + IH+F E R T+V HED V V D + ++ SA D ++
Sbjct: 283 IVCGTSQYSIHVFDVEQRRRIRTIVNAHEDDVN--SVCFADLGSNLIYSAGDDGLVK 337
>U53141-4|AAA96106.1| 528|Caenorhabditis elegans Mutator protein 14
protein.
Length = 528
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 136 DYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTY-IRCGRYKR 273
++ + H +V RG+DV V + I+ SA DTY R GR R
Sbjct: 423 EFRKIHGVVCTNILARGIDVSSVKHTIIMEMSADFDTYKHRIGRVGR 469
>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
protein Y71F9AL.17 protein.
Length = 1232
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 76 NKPLLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVR 183
++P+ + DD+KI ++ + TL+GH D++R
Sbjct: 64 DQPIFVSGGDDYKIKVWNYKQKRCIFTLLGHLDYIR 99
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,992,191
Number of Sequences: 27780
Number of extensions: 337935
Number of successful extensions: 1029
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -