Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0604
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.0  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 166 VQPEYALCDSPHQRIYVFCGHPVHKVIAVYLRMVV 62
           V PEY+    PH R +   G   H  +A+   M++
Sbjct: 34  VPPEYSDLVRPHWRAFPAPGKHFHIGLAIIYSMLL 68


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 65  YHAQINRYYFVHWMTTKYIYSLVRTITERILWLDTKT 175
           Y   I+R+Y +   T       +  +T  +LWLD+++
Sbjct: 244 YEFSISRHYGILHATYVIPAVTMMLLTLTVLWLDSRS 280


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 166 VQPEYALCDSPHQRIYVFCGHPVHKVIAVYLRMVV 62
           V PEY+    PH R +   G   H  +A+   M++
Sbjct: 34  VPPEYSDLVHPHWRAFPAPGKHFHIGLAIIYSMLL 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,963
Number of Sequences: 438
Number of extensions: 4255
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)