Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0603
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    37   0.004
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    34   0.026
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    33   0.035
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    32   0.11 
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    30   0.43 
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    29   0.75 
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    29   0.75 
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    29   0.99 
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    28   1.7  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    28   1.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.3  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.0  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   4.0  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    25   9.2  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   9.2  

>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 23/82 (28%), Positives = 38/82 (46%)
 Frame = +3

Query: 516 DGDYAWDSSLQGYILSSFFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAA 695
           D D  +       ++S F+  +V+   PF  L KRFGA   L   ML  S   + +  AA
Sbjct: 88  DKDLGFVGDQYNIMISIFYIPFVLCAFPFSYLYKRFGAARILPFFML--SFGAMSLCQAA 145

Query: 696 EAGYGWLIVVRFIQGLGXGXIV 761
              +G ++ VR+  G+    ++
Sbjct: 146 VKNFGGMMAVRWFLGMAESAVL 167


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 33.9 bits (74), Expect = 0.026
 Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
 Frame = +3

Query: 594 IPF-GILSKRFGARLFLGVGMLINSVFGLLVPVAAEAGYGWLIVVRFIQGLGXGXIVRAL 770
           +PF GI+S+  G ++ L   +++  +FG  +  AA+    WL++ R +QG+G G I+  +
Sbjct: 142 LPFCGIMSEVVGRKIVLYTSIVL-FLFGSAMCGAAQ-NMLWLVLCRAVQGIGGGGIMSLV 199

Query: 771 TL 776
           T+
Sbjct: 200 TI 201


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 33.5 bits (73), Expect = 0.035
 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
 Frame = +3

Query: 594 IPF-GILSKRFGARLFLGVGMLINSVFGLLVPVAAEAGYGWLIVVRFIQGLGXGXIVRAL 770
           +PF GI+S+  G ++ L   +++  +FG  +  AA+    WL++ R +QG+G G I   +
Sbjct: 142 LPFCGIMSEVVGRKIVLYTSIVL-FLFGSAMCGAAQ-NMLWLVLCRAVQGIGGGGITSLV 199

Query: 771 TL 776
           T+
Sbjct: 200 TI 201


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 18/74 (24%), Positives = 38/74 (51%)
 Frame = +3

Query: 522 DYAWDSSLQGYILSSFFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAEA 701
           D   +  +  +  ++F+ GY++ + P  +L +RF     L V ++I   +G L+ + + A
Sbjct: 94  DLKMEGQMYSWSGTAFYLGYLVFEFPASLLLQRFPLSKTLCVFLVI---WGFLLCMTSVA 150

Query: 702 GYGWLIVVRFIQGL 743
            Y   I +R + G+
Sbjct: 151 NYPGFIALRVLLGM 164


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +3

Query: 567 FFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAEAGYGWLIVVRFIQGLG 746
           F+ GY++ Q P   + + F    F+G+     SV   L   A    YG LI +RF  G  
Sbjct: 146 FYVGYIVGQFPGHYIMQTFPLGKFVGLVTFSWSVIVFLHCCA--YNYGGLIALRFFLGFT 203

Query: 747 XGXIVRAL 770
              ++ A+
Sbjct: 204 ESCLLPAM 211


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 711 WLIVVRFIQGLGXGXIVRALTL 776
           WLIV R IQGLG G I+  + +
Sbjct: 186 WLIVCRAIQGLGGGGIISLVNI 207


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +3

Query: 567 FFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAEAGYGWLIVVRFIQGL 743
           F+ G+VI QIP  +L +RF    F+     + ++  ++    A   +  L+ +RF  GL
Sbjct: 133 FYVGFVIGQIPGHMLLQRFPVSKFVAASTALWTI--IIFLHCAAYNFSGLMALRFFLGL 189


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 558 LSSFFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAEAGYGWLIVVRFIQ 737
           +S F  GY +  I +  +S+  G +  L +G+ + SVF + V  A +     +++ RF  
Sbjct: 180 VSLFMLGYCLGPICWAPMSEITGRKTPLYIGLFLFSVFQIAVATAQD--IQTIMICRFFG 237

Query: 738 GLG 746
           G G
Sbjct: 238 GYG 240


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +3

Query: 558 LSSFFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAEAGYGWLIVVRFIQ 737
           ++ F  GY+   I +  LS+  G +L L +GM    +F + V VA +     +++ RF  
Sbjct: 176 MTVFLCGYIAGPIVWAPLSELSGRKLPLLIGMFGFGIFNISVAVAKD--IQTIMMCRFFS 233

Query: 738 G 740
           G
Sbjct: 234 G 234


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = +3

Query: 558 LSSFFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAEAGYGWLIVVRFIQ 737
           +S +  G+    I +  +S+  G ++ L VGM + S+F + V VA +     +++ RF  
Sbjct: 139 MSLYVCGFASGPILWAPISELVGRKIPLIVGMFMFSIFSIAVAVAKDV--QTVMICRFFS 196

Query: 738 G 740
           G
Sbjct: 197 G 197


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 333 NSALGYVHAVSRNGKRLHHEDEHVG 407
           NS+LGY  +++R+ K + +  EH+G
Sbjct: 92  NSSLGYAPSITRSIKSISNNTEHLG 116



 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 760  TMXPSPSPCMNLTTMSHPYPASAATGTSRPNTEFISIPTPRN 635
            T  P P+P   L  +  P P + A     P++E  S+ TPR+
Sbjct: 1215 TAPPVPTPSAGLPPV--PVPTAKAPPVPAPSSEAPSVSTPRS 1254


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 769 SARTMXPSPSPCMNLTTMSHPYPASAATGTSRPNTEFISIPTPR 638
           +A TM  SP P  N  T   PY  S     +RP + +   P+ R
Sbjct: 89  NASTMYASPPPSSNYNTAKPPYQTSQF--YARPQSSYAPPPSGR 130


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 766 ARTMXPSPSPCMNLTTMSHPYPASAATGTSRPNTEFISIPTP 641
           A T+ P+P P  N+TT S    ++  +  S  +T   SI  P
Sbjct: 31  ATTVTPTPLPSANVTTTSFSSASTETSTHSVTSTNITSIVPP 72


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 567 FFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVA-AEAGYGWLIVVRFIQGL 743
           F  GY+I Q+P     +R  ARL+  V   +N ++GL+   + A      L+++RF   +
Sbjct: 76  FTCGYIIGQLPGSYALQRVPARLWFSV---MNILWGLMTIFSFAVHSVRALMILRFFMAV 132


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 333 NSALGYVHAVSRNGKRLHHEDEHVGRHRCYGQPHSSYCH 449
           +S +   +  S NG  L H+ E +   + Y + H +YCH
Sbjct: 12  SSLVSSKNMTSENG--LEHQFEELLVEKQYSEEHCAYCH 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,144
Number of Sequences: 5004
Number of extensions: 65129
Number of successful extensions: 208
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)