Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0603
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             30   0.021
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    25   1.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 30.3 bits (65), Expect = 0.021
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 333  NSALGYVHAVSRNGKRLHHEDEHVGRHRCYGQPHSSYCHR*RDRHRMRPSQS*QNQ 500
            +S +  V AV R    +H    +      YG PHS+  ++ ++RH MRP +  Q Q
Sbjct: 1046 DSLVEAVRAVQRGEMSVHRAGSY------YGVPHSTLEYKVKERHLMRPRKRDQKQ 1095


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 576 GYVITQIPFGILSKRFGA--RLFLGVGMLINSVFGLLVPV 689
           G ++  I FG+++ +FGA  +L +   M++N +   LV +
Sbjct: 242 GMIVFCITFGLVAGQFGAQGKLIVDFFMILNEIIMKLVGI 281


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 11  ALRATNTSSRKHGVLTSAYSHS 76
           A R TN++S KH    S YSH+
Sbjct: 215 APRLTNSNSIKHESDNSDYSHT 236


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 287 WPSWMRIPRTNQAGLEL 337
           WP  M IP+ N+ G  +
Sbjct: 583 WPQHMLIPKGNKEGFAM 599


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/28 (25%), Positives = 12/28 (42%)
 Frame = -2

Query: 751 PSPSPCMNLTTMSHPYPASAATGTSRPN 668
           P P  C     +  P  +   +GT +P+
Sbjct: 563 PQPPQCPRFRKLDSPSDSGIESGTEKPD 590


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,302
Number of Sequences: 438
Number of extensions: 4664
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)