Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0602
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 27 2.7
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 26 4.7
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 8.2
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 8.2
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 8.2
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 8.2
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 8.2
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 25 8.2
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 8.2
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po... 25 8.2
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 8.2
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 8.2
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 8.2
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 8.2
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 8.2
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 323 CPLYVRQAY-LSASWDKNIKLVHLDKSAKCRINF 421
C L Y LSASWDK I+L L+K +C F
Sbjct: 69 CALSFDSHYALSASWDKTIRLWDLEK-GECTHQF 101
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -1
Query: 320 VDHETSAVPMSVLNKYLFYYALYMNINHI 234
+DH+++ + K L YY L + +NH+
Sbjct: 198 IDHDSTREAFTSSEKVLSYYELDLGLNHV 226
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 323 TVDHETSAVPMSVLNKYLFYYALYMNINHISTINEKTII 207
T+D + +L LY+N+ +IS +N TI+
Sbjct: 1267 TIDESDIGTILHILEHKNREQVLYLNVKYISNLNPSTIM 1305
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 323 TVDHETSAVPMSVLNKYLFYYALYMNINHISTINEKTII 207
T+D + +L LY+N+ +IS +N TI+
Sbjct: 1267 TIDESDIGTILHILEHKNREQVLYLNVKYISNLNPSTIM 1305
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 323 TVDHETSAVPMSVLNKYLFYYALYMNINHISTINEKTII 207
T+D + +L LY+N+ +IS +N TI+
Sbjct: 1267 TIDESDIGTILHILEHKNREQVLYLNVKYISNLNPSTIM 1305
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 323 TVDHETSAVPMSVLNKYLFYYALYMNINHISTINEKTII 207
T+D + +L LY+N+ +IS +N TI+
Sbjct: 1267 TIDESDIGTILHILEHKNREQVLYLNVKYISNLNPSTIM 1305
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 323 TVDHETSAVPMSVLNKYLFYYALYMNINHISTINEKTII 207
T+D + +L LY+N+ +IS +N TI+
Sbjct: 1267 TIDESDIGTILHILEHKNREQVLYLNVKYISNLNPSTIM 1305
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 25.4 bits (53), Expect = 8.2
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = -2
Query: 439 FFIGIIKIYSAFSRFIQM-DKFYIFVPRGRQVRLPDVKWALSIMKHR--QYQCRCLISIF 269
++IGI I+ F R + D++ +++ V L L ++HR +Y RC+ SIF
Sbjct: 289 YWIGIF-IWIGFGRMLGWSDEWQLYINTAVAVELTFTSVFLQNVRHRHMKYIDRCVTSIF 347
Query: 268 FITHYI 251
I I
Sbjct: 348 RIDSVI 353
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 323 TVDHETSAVPMSVLNKYLFYYALYMNINHISTINEKTII 207
T+D + +L LY+N+ +IS +N TI+
Sbjct: 1267 TIDESDIGTILHILEHKNREQVLYLNVKYISNLNPSTIM 1305
>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -2
Query: 703 PKKIYHSISIRKEQRTSLEQPRFTFVPL 620
P+++Y SI++RK+ + F+F+ L
Sbjct: 33 PRRVYRSITLRKQNINRYGREDFSFIVL 60
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 323 TVDHETSAVPMSVLNKYLFYYALYMNINHISTINEKTII 207
T+D + +L LY+N+ +IS +N TI+
Sbjct: 1267 TIDESDIGTILHILEHKNREQVLYLNVKYISNLNPSTIM 1305
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 323 TVDHETSAVPMSVLNKYLFYYALYMNINHISTINEKTII 207
T+D + +L LY+N+ +IS +N TI+
Sbjct: 1267 TIDESDIGTILHILEHKNREQVLYLNVKYISNLNPSTIM 1305
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 323 TVDHETSAVPMSVLNKYLFYYALYMNINHISTINEKTII 207
T+D + +L LY+N+ +IS +N TI+
Sbjct: 1267 TIDESDIGTILHILEHKNREQVLYLNVKYISNLNPSTIM 1305
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 323 TVDHETSAVPMSVLNKYLFYYALYMNINHISTINEKTII 207
T+D + +L LY+N+ +IS +N TI+
Sbjct: 1267 TIDESDIGTILHILEHKNREQVLYLNVKYISNLNPSTIM 1305
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 323 TVDHETSAVPMSVLNKYLFYYALYMNINHISTINEKTII 207
T+D + +L LY+N+ +IS +N TI+
Sbjct: 1267 TIDESDIGTILHILEHKNREQVLYLNVKYISNLNPSTIM 1305
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,695,457
Number of Sequences: 5004
Number of extensions: 50886
Number of successful extensions: 142
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -