Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0600
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe...    31   0.29 
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    28   1.6  
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|...    27   2.7  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    26   6.3  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   6.3  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    26   6.3  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   6.3  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   8.3  
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...    26   8.3  

>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 259 NIALDPAFILICVGTITFI-IGFTGCVGALRENTCLLACYAVFLALLLLAEMTTGIL 426
           NI LDP + +  V  +T I I F   VG L  + C+++ +A    LL   E   GIL
Sbjct: 107 NIRLDPKYSIPGVCAVTLIVIMFLAPVGRLFWSFCIVSSFAGLHCLLTTYENPAGIL 163


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +2

Query: 146 YVIFG-VNVLFWLVGLIVLAVGVWSWTEK 229
           +++F  V+ L W +GLIVL +G+WS  +K
Sbjct: 22  FILFPLVSFLMWTIGLIVL-LGLWSTQDK 49


>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 384 FGTSATCRDDNWNPVLCLQGLDKT 455
           +GT++TC+D+ +    C  G+ KT
Sbjct: 97  YGTASTCQDNTYCSYACKPGMSKT 120


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -1

Query: 306 YCANTYEYECWI*SYVCRRDKLLKVSFSVQDHT---PTARTIKPTNQNK 169
           YC+  Y Y  +I  Y       LK+S +    +    TAR   PTNQ++
Sbjct: 19  YCSKNYFYRSFIQYYSPSNGPYLKISMNKAPQSLGLCTARGDSPTNQDR 67


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 255 YKHSFRSSIHTHMCWHNNIHNWLHWV 332
           +K     ++H+ +C  N +H WL W+
Sbjct: 238 FKQDLYFNLHS-ICDRNTVHMWLQWI 262


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 403 QVAEVPKTQHNKLTNKYFHEVHQHTQ*SQL*MLLCQ 296
           Q  E+ KTQH  L  K+F +V ++   S + +L+ +
Sbjct: 85  QDGEIYKTQHKPLATKWFQKVSKNENQSWMIVLVAE 120


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +3

Query: 648 FSCCRNKPQDIIRNKQCGYDVRKSPDTLEIAKIIYDK 758
           F   + K   I +   CG   R  P TLE  K +Y K
Sbjct: 280 FDAAKAKSLGITKGLDCGRLARGEPVTLENGKTVYPK 316


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 301 TITFIIGFTGCVGALRENTCLLACY 375
           T+  I+G   C+  +RE+ C + C+
Sbjct: 564 TVCGILGLDQCILLIRESNCFVRCF 588


>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 853 IPQDLCKSDTYSRSRYNQQVVFEPLLGCFEEP 758
           +PQDLC+    ++ +     V E L+  +EEP
Sbjct: 116 VPQDLCRKFNSNKEQPYPDDVLEQLMFRYEEP 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,882,980
Number of Sequences: 5004
Number of extensions: 86026
Number of successful extensions: 246
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)