Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0600
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1510 + 30665857-30666038,30666137-30666236,30666358-306664...    34   0.13 
06_03_0963 + 26368959-26369462,26370900-26371205                       31   0.93 
01_06_0216 + 27618116-27618548,27618960-27619042,27619169-276192...    29   3.8  
08_01_0389 + 3437383-3437651,3438279-3438396,3438914-3439018,343...    29   6.6  
03_04_0142 - 17656751-17657554                                         29   6.6  
02_03_0226 - 16591383-16592030,16592132-16592211,16592246-165929...    29   6.6  
01_06_1493 + 37753816-37755558                                         28   8.7  

>06_03_1510 +
           30665857-30666038,30666137-30666236,30666358-30666438,
           30666514-30666618,30666722-30666916,30667440-30667501,
           30667870-30667885,30668007-30668068,30668933-30668951
          Length = 273

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 20/74 (27%), Positives = 30/74 (40%)
 Frame = +1

Query: 232 HLQQLVPPTNIALDPAFILICVGTITFIIGFTGCVGALRENTCLLACYAVFLALLLLAEM 411
           HLQ L+P           L+  G    ++   GCV A   + C L  Y +   +++L E 
Sbjct: 52  HLQDLLPDLWFVC----ALMAAGLFYCLLLLAGCVAAEINSPCFLCFYTILAVVMMLLEA 107

Query: 412 TTGILFFVFKDWIK 453
                 F  K WI+
Sbjct: 108 ALAADLFFNKHWIQ 121


>06_03_0963 + 26368959-26369462,26370900-26371205
          Length = 269

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 286 LICVGTITFIIGFTGCVGALRENTCLLACYAVFLALLLLAEMTTGILFFV 435
           ++ +G +   +   G  GAL   +CLL  Y + L LL+LA     +  FV
Sbjct: 47  VVALGVLLLALSLAGLAGALCGASCLLWLYLLALFLLILALFVFTVFAFV 96


>01_06_0216 +
           27618116-27618548,27618960-27619042,27619169-27619225,
           27619255-27619407,27619777-27619872,27620103-27620183,
           27620184-27620254,27620343-27620385,27620502-27620582,
           27620684-27620743,27621018-27621083,27621358-27621455,
           27621794-27621842,27621933-27621977,27622845-27623369
          Length = 646

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 522 IDWIQEEWLQCCGVEGPKDWDRNAYFNCSSG 614
           IDWI E  L CC VE     + N YF+ ++G
Sbjct: 190 IDWIFEH-LTCCSVELYDPLEHNIYFDSNAG 219


>08_01_0389 +
           3437383-3437651,3438279-3438396,3438914-3439018,
           3439983-3440180,3440269-3440355
          Length = 258

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 280 FILICVGTITFIIGFTGCVGALRENTCL 363
           +  I VG I FI    GC GA R   CL
Sbjct: 93  YAFIGVGVILFITSIFGCAGASRGGCCL 120


>03_04_0142 - 17656751-17657554
          Length = 267

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
 Frame = +3

Query: 183 WA**SSLWVCGLGQKKTPSTT-----CPAYKHSFRSS----IHTHMCWHN-NIHNWLHWV 332
           W   SS W  GLG+K TP+ T     C   + S  +S    +   +CW + NI   + +V
Sbjct: 2   WNFASSAWGSGLGKKNTPNCTPSNGDCSDDEASSCTSREEGLECPICWESFNIVENVPYV 61

Query: 333 CWC 341
            WC
Sbjct: 62  LWC 64


>02_03_0226 -
           16591383-16592030,16592132-16592211,16592246-16592971,
           16593060-16593192,16596839-16597518,16597604-16597666,
           16597740-16597916,16598414-16598542,16598638-16598796,
           16599057-16599224,16599418-16599519,16599812-16599857
          Length = 1036

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 811 RYNQQVVFEPLLGCFEEPLSY 749
           RYN  V  EP  GC+ +PLSY
Sbjct: 500 RYNVPVAIEPFYGCY-DPLSY 519


>01_06_1493 + 37753816-37755558
          Length = 580

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +3

Query: 291 MCWHNNIHNWLHWVCWCTS*KYLFVSLLCCVFGTSATCRDDNWNPVLCLQGLDKTTGHDW 470
           + W N  ++W+  + W        V  LC   G  + C ++   P  CL+G  +    +W
Sbjct: 49  LTWMNGANDWM--LFWSQPKAQCDVYSLC---GPFSVCTENAMAPCSCLRGFGEQNVGEW 103

Query: 471 ISNVH 485
           +   H
Sbjct: 104 LQGDH 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,795,193
Number of Sequences: 37544
Number of extensions: 551681
Number of successful extensions: 1469
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1469
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)