Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0600
         (891 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    53   4e-09
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    25   1.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.6  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   4.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.5  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 52.8 bits (121), Expect = 4e-09
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = +1

Query: 274 PAFILICVGTITFIIGFTGCVGALRENTCLLACYAVFLALLLLAEMTTGILFFV 435
           P+  LI +G+I F+I F GC GA+RE+ C+   +A FL  +LL ++   +  F+
Sbjct: 51  PSITLIVLGSIIFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFI 104



 Score = 26.2 bits (55), Expect = 0.40
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 513 QNMIDWIQEEWLQCCGVEGPKDWD 584
           ++ ID+IQ+  LQCCGV    D++
Sbjct: 133 KDFIDFIQKN-LQCCGVHSLSDYN 155


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 764 LEAAEEWFEHNLLIVATSAVCIAFAQILGYM 856
           L+   +WF  N+L+V T A  +    ILG++
Sbjct: 53  LQRVVDWFRKNMLLVFTIA-AVLVGLILGFL 82


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 285 THMCWHNNIHNWLHWVCWCTS*KYLFVSLLC 377
           T + W N+  N + + CW    +  FV +LC
Sbjct: 376 TWLGWINSGMNPVIYACWSRDFRRAFVRILC 406


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 301 TITFIIGFTGCVGAL 345
           TI  I GF  CVGAL
Sbjct: 3   TIVLIFGFCVCVGAL 17


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -1

Query: 357  SIFTKCTNTPSEANYECYCANTYEYE 280
            S+F K  +      Y CY  NT+ ++
Sbjct: 1330 SLFIKEVDRTDAGEYSCYVENTFGHD 1355


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 681 IRNKQCGYDVRKSPDTLEIAKIIYD 755
           IRN+ CG  +    D      +IYD
Sbjct: 315 IRNEDCGSAIAYVSDVFRYGLLIYD 339


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 446 G*NNRPRLDFKRSSSTIEKTPSTKHDRLDPRRMAP 550
           G  N+     KR +S     P TKH +LD + + P
Sbjct: 99  GYTNKMSTRGKRPASPGYVQPPTKHQKLDQKFIFP 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 261,289
Number of Sequences: 438
Number of extensions: 6095
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)