Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0600
(891 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g32400.2 68414.m03998 senescence-associated family protein co... 50 2e-06
At1g32400.1 68414.m03997 senescence-associated family protein co... 50 2e-06
At2g20230.1 68415.m02364 expressed protein 33 0.34
At2g20740.2 68415.m02437 expressed protein 30 2.4
At2g20740.1 68415.m02436 expressed protein 30 2.4
At2g19580.1 68415.m02287 senescence-associated protein-related s... 30 2.4
At1g12380.1 68414.m01431 expressed protein 30 2.4
At5g26580.1 68418.m03186 MADS-box protein (AGL34) MADS box prote... 29 3.1
At4g28770.1 68417.m04114 expressed protein 29 4.1
At3g17850.1 68416.m02275 protein kinase, putative similar to IRE... 29 4.1
At5g37790.1 68418.m04551 protein kinase family protein contains ... 28 7.2
At5g26650.1 68418.m03175 MADS-box protein (AGL36) contains inter... 28 9.6
At3g59640.1 68416.m06654 glycine-rich protein 28 9.6
>At1g32400.2 68414.m03998 senescence-associated family protein
contains Pfam profile PF00335: Tetraspanin family
Length = 280
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = +1
Query: 280 FILICVGTITFIIGFTGCVGALRENTCLLACYAVFLALLLLAEMTTGILFFVFKDW---I 450
++ I +G F+I GCVG + C L+CY++ L LL+L E+ F W +
Sbjct: 83 YLFIGIGVALFVISCCGCVGTCSRSVCCLSCYSLLLILLILVELGFAAFIFFDNSWRDEL 142
Query: 451 KQQATTGFQTFIVHYRED 504
T F T RE+
Sbjct: 143 PSDRTGNFDTIYNFLREN 160
>At1g32400.1 68414.m03997 senescence-associated family protein
contains Pfam profile PF00335: Tetraspanin family
Length = 280
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = +1
Query: 280 FILICVGTITFIIGFTGCVGALRENTCLLACYAVFLALLLLAEMTTGILFFVFKDW---I 450
++ I +G F+I GCVG + C L+CY++ L LL+L E+ F W +
Sbjct: 83 YLFIGIGVALFVISCCGCVGTCSRSVCCLSCYSLLLILLILVELGFAAFIFFDNSWRDEL 142
Query: 451 KQQATTGFQTFIVHYRED 504
T F T RE+
Sbjct: 143 PSDRTGNFDTIYNFLREN 160
>At2g20230.1 68415.m02364 expressed protein
Length = 270
Score = 32.7 bits (71), Expect = 0.34
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +1
Query: 280 FILICVGTITFIIGFTGCVGALRENTCLLACYAVFLALLLLAEMTTGILFFVFKDWIK 453
+ + VG + I+ F G + A N C L Y++ LL+L E + + W K
Sbjct: 102 YSFMAVGILVCIVTFIGFIAAEAINGCCLCFYSILKTLLILLEAALVAYIAIDRHWEK 159
>At2g20740.2 68415.m02437 expressed protein
Length = 180
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 295 VGTITFIIGFTGCVGALRENTCLLACYAVFLALLLLAEMTTGILFFVFKDWIK 453
+G I ++ G + A N C L Y F+ LL + E F+ +DW K
Sbjct: 23 LGAILCVVTCAGHIAAETVNGCCLYLYMGFIVLLTMVEGGVVADIFLNRDWKK 75
>At2g20740.1 68415.m02436 expressed protein
Length = 221
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 295 VGTITFIIGFTGCVGALRENTCLLACYAVFLALLLLAEMTTGILFFVFKDWIK 453
+G I ++ G + A N C L Y F+ LL + E F+ +DW K
Sbjct: 64 LGAILCVVTCAGHIAAETVNGCCLYLYMGFIVLLTMVEGGVVADIFLNRDWKK 116
>At2g19580.1 68415.m02287 senescence-associated protein-related
similar to senescence-associated protein 5 [Hemerocallis
hybrid cultivar] gi|3551954|gb|AAC34855; contains a
transmembrane 4 family signature; rare (GC) splice donor
consensus found instead of (GT) at intron 2.
Length = 270
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 286 LICVGTITFIIGFTGCVGALRENTCLLACYAVFLALLLLAEMTTGILFFV 435
++ +G + ++ TG +GA + LLA Y +A+L+ + I FV
Sbjct: 45 VVVLGVLILVVSATGFIGAYKYKETLLAVYLCCMAILIGLLLVVLIFAFV 94
>At1g12380.1 68414.m01431 expressed protein
Length = 793
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = -1
Query: 573 WDPRRRNTGAILLGSNRSCFVDGVFSIVDDERLKSSRGL 457
+D RR+ + GSN+ CF + +F++++D L S+R +
Sbjct: 461 YDDERRSCSSSSSGSNKVCFYEPLFNLLEDV-LSSARAI 498
>At5g26580.1 68418.m03186 MADS-box protein (AGL34) MADS box protein
EGM1, Eucalyptus grandis, EMBL:AF029975; contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 345
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -1
Query: 210 TPTARTIKPTNQNKTFTPKITYFKQQLTSLV 118
+PTART K NQ +IT K+QL +LV
Sbjct: 61 SPTARTRKMMNQETYLMERITKAKEQLQNLV 91
>At4g28770.1 68417.m04114 expressed protein
Length = 281
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/58 (22%), Positives = 25/58 (43%)
Frame = +1
Query: 280 FILICVGTITFIIGFTGCVGALRENTCLLACYAVFLALLLLAEMTTGILFFVFKDWIK 453
+ + +G + I+ G + A N C L Y++ LL++ E + + W K
Sbjct: 113 YCFMAIGILVCIVTIIGFIAAEAINGCCLCFYSILKTLLIIIEAALVGFIVIDRHWEK 170
>At3g17850.1 68416.m02275 protein kinase, putative similar to IRE
(incomplete root hair elongation) [Arabidopsis thaliana]
gi|6729346|dbj|BAA89783; contains protein kinase domain
Pfam:PF00069
Length = 1296
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 879 PLVGSEQSIYPRICAKAIHTAEVATINRLCS 787
PL+ E SI RIC + + T V +R+C+
Sbjct: 592 PLISEESSIMCRICEEEVPTTHVEDHSRVCT 622
>At5g37790.1 68418.m04551 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 552
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -3
Query: 859 KHIPQDLCKSDTYSRSRYNQQVVFEPLLGCFEEPLSYIILAISKVSGDFLTSYPH 695
K P+ C+ + S ++ +V PLLG +P + L VSG L Y H
Sbjct: 247 KESPKSFCRELMIASSLHSSNIV--PLLGFCIDPEEGLFLVYKYVSGGSLEHYLH 299
>At5g26650.1 68418.m03175 MADS-box protein (AGL36) contains interpro
domain: IPR002100 transcriptor factor, MADS box;
contains Pfam profile PF00319: SRF-type transcription
factor (DNA-binding and dimerisation domain)
Length = 327
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -1
Query: 252 RDKLLKVSFSVQDHTPTARTIKPTNQNKTFTPKITYFKQQLTSLVS 115
R+ KV+ + PTART K +Q +IT K+QL +L +
Sbjct: 61 REGAKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAA 106
>At3g59640.1 68416.m06654 glycine-rich protein
Length = 246
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 402 CRDDNWNPVLC-LQGLDKTTGHDWISNVHRPL*RRPRQQNMIDWIQEE 542
CR+ PV+C L G DK+ G + +S+ + + ++++ D ++E+
Sbjct: 65 CRNQRQGPVVCLLGGKDKSNGSNELSSTWEAIEKAMGKKSVEDMLREQ 112
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,230,916
Number of Sequences: 28952
Number of extensions: 454401
Number of successful extensions: 1229
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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