Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0598
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 90 3e-19
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 43 6e-05
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 40 3e-04
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 7.4
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces... 26 7.4
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 9.7
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 9.7
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb... 25 9.7
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 90.2 bits (214), Expect = 3e-19
Identities = 44/89 (49%), Positives = 58/89 (65%)
Frame = +1
Query: 538 EEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRXTCTCLALTNVGV 717
++ LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG ++H+ T LA+T V
Sbjct: 146 KKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVRE 205
Query: 718 L*PRFFFEVVGSHQDNFQRAYEELRKHLG 804
+V + NF Y+E R+ G
Sbjct: 206 EDKNELASIVSAVDANFSAKYDESRRKWG 234
Score = 78.6 bits (185), Expect = 1e-15
Identities = 34/56 (60%), Positives = 44/56 (78%)
Frame = +3
Query: 243 LVQIVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 410
L + V+WP+YIR+QR++ +L RLKVPP I QF +TLDK TA +FK+L KYRPET
Sbjct: 46 LSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPET 101
Score = 44.8 bits (101), Expect = 1e-05
Identities = 23/49 (46%), Positives = 27/49 (55%)
Frame = +1
Query: 178 NPLFEKRPKNFAIGQGIQPTRDLSRL*DGPSISASSARRLYFSVV*KCP 324
NPLF RP++F IGQ IQP RDLSR P RR ++ K P
Sbjct: 24 NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVP 72
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 42.7 bits (96), Expect = 6e-05
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +1
Query: 553 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 663
+V+A D +PIE++L LP LC VPY V K+ LG
Sbjct: 51 IVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 523 QAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 663
+A R+ E LV++A D+ P++++ +P LC VPY K LG
Sbjct: 63 KAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLG 109
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 291 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 392
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 25.8 bits (54), Expect = 7.4
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Frame = -2
Query: 330 SEGALSDDAEVQPSG------AGCGYTWAILQSGQVTSWLNALTNSKVLWPLLEERIHDL 169
S+ L D PSG AG G+ AI +GQ+ + N ++ KV+ PL+ I
Sbjct: 147 SDKVLQDGFRSFPSGHTSFSFAGLGFL-AIFLAGQLKMFRNKTSSWKVVVPLVPLSIASW 205
Query: 168 LGLN 157
+GL+
Sbjct: 206 IGLS 209
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 275 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 364
PHP SA S ++P P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 473 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 303
L F L +S Q FP FS L+NL + ++ Q L + R +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253
>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.4 bits (53), Expect = 9.7
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -3
Query: 389 QNLEKALSCSLVQCLGKLVDRRGHFQTT----LKYSLLALDADILGPSYNLDKSRV 234
++L K SC L + + +D+R H + L YS +ALDA + LDK+ +
Sbjct: 37 RSLAKKFSCKLDRDI-YAIDQRCHGDSPCVAPLSYSAMALDAFQFMKDHKLDKASI 91
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,018
Number of Sequences: 5004
Number of extensions: 53548
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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