Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0598
(817 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 99 2e-21
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 2e-21
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27) 46 4e-05
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) 38 0.013
SB_57776| Best HMM Match : EB (HMM E-Value=2.9) 29 4.5
SB_46912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_38231| Best HMM Match : Yippee (HMM E-Value=4) 29 4.5
SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74) 28 7.9
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) 28 7.9
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 99 bits (238), Expect = 2e-21
Identities = 46/89 (51%), Positives = 62/89 (69%)
Frame = +1
Query: 538 EEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRXTCTCLALTNVGV 717
++ LVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+ T L +T V
Sbjct: 59 KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQ 118
Query: 718 L*PRFFFEVVGSHQDNFQRAYEELRKHLG 804
++ S + N+ ++E+RKH G
Sbjct: 119 EDKNSLNNLIESVKTNYNERFDEIRKHWG 147
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 722 DRASSSKSXEAIKTTFNERTRSSASTWGXGV 814
D+ S + E++KT +NER WG G+
Sbjct: 120 DKNSLNNLIESVKTNYNERFDEIRKHWGGGI 150
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 99 bits (238), Expect = 2e-21
Identities = 46/89 (51%), Positives = 62/89 (69%)
Frame = +1
Query: 538 EEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRXTCTCLALTNVGV 717
++ LVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+ T L +T V
Sbjct: 150 KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQ 209
Query: 718 L*PRFFFEVVGSHQDNFQRAYEELRKHLG 804
++ S + N+ ++E+RKH G
Sbjct: 210 EDKNSLNNLIESVKTNYNERFDEIRKHWG 238
Score = 83.4 bits (197), Expect = 2e-16
Identities = 35/56 (62%), Positives = 46/56 (82%)
Frame = +3
Query: 243 LVQIVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 410
L + VRWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ + LFK+L KYRPET
Sbjct: 51 LSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPET 106
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = +1
Query: 178 NPLFEKRPKNFAIGQGIQPTRDLSR 252
NPL EKRP+NF IG IQP RDLSR
Sbjct: 29 NPLIEKRPRNFGIGGDIQPKRDLSR 53
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 722 DRASSSKSXEAIKTTFNERTRSSASTWGXGV 814
D+ S + E++KT +NER WG G+
Sbjct: 211 DKNSLNNLIESVKTNYNERFDEIRKHWGGGI 241
>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
Length = 187
Score = 46.0 bits (104), Expect = 4e-05
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 553 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRXTCTCLALTNVG 714
+V+A D +P+E++L LP LC VPY V+ K+ LG V R C N G
Sbjct: 113 IVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALGRATGVTRPVIACAVTVNEG 168
>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
Length = 544
Score = 37.5 bits (83), Expect = 0.013
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 523 QAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 651
+A R+ E V++A DV PI+++ +P +C +PY V K
Sbjct: 108 KALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150
>SB_57776| Best HMM Match : EB (HMM E-Value=2.9)
Length = 669
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 171 DRESSLREEAKELCYWSGHSANS*LVQIV 257
DR ++ E KE+CYW GH + + ++V
Sbjct: 187 DRRKNMEERHKEMCYW-GHKFETYVTKLV 214
>SB_46912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 219 SGHSANS*LVQIVRWPKYIRIQRQKAVL 302
SGH+ N L Q ++W KYI ++ K L
Sbjct: 4 SGHAQNQRLSQSIQWNKYINCKKNKTNL 31
>SB_38231| Best HMM Match : Yippee (HMM E-Value=4)
Length = 230
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 219 SGHSANS*LVQIVRWPKYIRIQRQKAVL 302
SGH+ N L Q ++W KYI ++ K L
Sbjct: 4 SGHAQNQRLSQSIQWNKYINCKKNKTNL 31
>SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 219 SGHSANS*LVQIVRWPKYIRIQRQKAVL 302
SGH+ N L Q ++W KYI ++ K L
Sbjct: 546 SGHAQNQRLSQSIQWNKYINCKKNKTNL 573
>SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 171 DRESSLREEAKELCYWSGHSANS*LVQIV 257
DR ++ E KE+CYW GH + + ++V
Sbjct: 137 DRRKNMEERHKEMCYW-GHKFETYVTKLV 164
>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
Length = 437
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 701 RAKHVHVXRCTSAPRRDLPLT 639
R +H H+ RCTSAP P T
Sbjct: 74 RKRHFHLRRCTSAPEPSSPNT 94
>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
Length = 212
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 488 PLWWRLIFLGNLSFSSFPQPLFPG 417
P WW ++F+G + FS L+PG
Sbjct: 56 PKWWFMLFIGTIVFSIGYLVLYPG 79
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,039,679
Number of Sequences: 59808
Number of extensions: 433964
Number of successful extensions: 1349
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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