Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0598
(817 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 88 8e-18
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 88 8e-18
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 82 5e-16
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 61 8e-10
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 38 0.011
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.035
U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonin... 29 4.0
U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase ... 29 4.0
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 9.2
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 87.8 bits (208), Expect = 8e-18
Identities = 42/85 (49%), Positives = 57/85 (67%)
Frame = +1
Query: 550 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRXTCTCLALTNVGVL*PR 729
LV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V R T +AL +V
Sbjct: 155 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKS 214
Query: 730 FFFEVVGSHQDNFQRAYEELRKHLG 804
++V + +NF +EE+RKH G
Sbjct: 215 ALNKLVETVNNNFSERHEEIRKHWG 239
Score = 86.6 bits (205), Expect = 2e-17
Identities = 40/89 (44%), Positives = 52/89 (58%)
Frame = +3
Query: 243 LVQIVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 422
+ + V+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 52 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAK 111
Query: 423 XXXXXXXXXXXXXXXXXXXXXRPNTIRSG 509
RPNT+R G
Sbjct: 112 KNRLRARAEARAAGKKEEVTKRPNTVRHG 140
Score = 41.5 bits (93), Expect = 7e-04
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +1
Query: 178 NPLFEKRPKNFAIGQGIQPTRDLSR 252
NPLFEKR +NF IGQ IQP +D++R
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTR 54
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 87.8 bits (208), Expect = 8e-18
Identities = 42/85 (49%), Positives = 57/85 (67%)
Frame = +1
Query: 550 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRXTCTCLALTNVGVL*PR 729
LV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V R T +AL +V
Sbjct: 135 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKS 194
Query: 730 FFFEVVGSHQDNFQRAYEELRKHLG 804
++V + +NF +EE+RKH G
Sbjct: 195 ALNKLVETVNNNFSERHEEIRKHWG 219
Score = 82.2 bits (194), Expect = 4e-16
Identities = 34/56 (60%), Positives = 45/56 (80%)
Frame = +3
Query: 243 LVQIVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 410
+ + V+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 52 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES 107
Score = 41.5 bits (93), Expect = 7e-04
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +1
Query: 178 NPLFEKRPKNFAIGQGIQPTRDLSR 252
NPLFEKR +NF IGQ IQP +D++R
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTR 54
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 81.8 bits (193), Expect = 5e-16
Identities = 34/56 (60%), Positives = 45/56 (80%)
Frame = +3
Query: 243 LVQIVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 410
+ + V+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
Score = 41.5 bits (93), Expect = 7e-04
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +1
Query: 178 NPLFEKRPKNFAIGQGIQPTRDLSR 252
NPLFEKR +NF IGQ IQP +D++R
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTR 157
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 61.3 bits (142), Expect = 8e-10
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +3
Query: 243 LVQIVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 356
+ + V+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Score = 41.5 bits (93), Expect = 7e-04
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +1
Query: 178 NPLFEKRPKNFAIGQGIQPTRDLSR 252
NPLFEKR +NF IGQ IQP +D++R
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTR 157
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +1
Query: 550 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 663
++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 53 IIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 37.5 bits (83), Expect = 0.011
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 532 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG-ALVHR 678
R E + ++A +V PI++ +P +C + +PY + + +LG A+ HR
Sbjct: 81 RRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHR 130
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.035
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -3
Query: 452 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 333
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonine
kinase protein.
Length = 982
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 490 PTPSDPDKHSHQAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVK 645
P+PS+P S + E +++ AHD DP++ + P + + +P+ VK
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAPV--KDLHMPHRAVK 501
>U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase
protein 18, isoforma protein.
Length = 982
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 490 PTPSDPDKHSHQAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVK 645
P+PS+P S + E +++ AHD DP++ + P + + +P+ VK
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAPV--KDLHMPHRAVK 501
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 325 LRSTNLPRHWTRLQLRA 375
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,826,077
Number of Sequences: 27780
Number of extensions: 318892
Number of successful extensions: 855
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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