Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0598
(817 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 107 1e-23
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 103 2e-22
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 43 2e-04
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 40 0.003
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 40 0.003
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 40 0.003
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 39 0.003
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 4.9
At4g16780.1 68417.m02535 homeobox-leucine zipper protein 4 (HAT4... 29 4.9
At3g55580.1 68416.m06171 regulator of chromosome condensation (R... 28 6.4
At4g21610.1 68417.m03132 zinc finger protein, putative similar t... 28 8.5
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 107 bits (256), Expect = 1e-23
Identities = 53/90 (58%), Positives = 65/90 (72%)
Frame = +1
Query: 535 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRXTCTCLALTNVG 714
+ + LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+ T +CL LT V
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVK 199
Query: 715 VL*PRFFFEVVGSHQDNFQRAYEELRKHLG 804
F +++ + + NF YEE RK G
Sbjct: 200 NEDKLEFSKILEAIKANFNDKYEEYRKKWG 229
Score = 81.8 bits (193), Expect = 5e-16
Identities = 35/55 (63%), Positives = 45/55 (81%)
Frame = +3
Query: 243 LVQIVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 407
L + ++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 43 LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE 97
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 178 NPLFEKRPKNFAIGQGIQPTRDLSRL*DGP-SISASSARRL 297
NPLFE+RPK F IG + P +DLSR P SI +R+
Sbjct: 21 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 61
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 722 DRASSSKSXEAIKTTFNERTRSSASTWGXGV 814
D+ SK EAIK FN++ WG G+
Sbjct: 202 DKLEFSKILEAIKANFNDKYEEYRKKWGGGI 232
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 103 bits (246), Expect = 2e-22
Identities = 52/90 (57%), Positives = 63/90 (70%)
Frame = +1
Query: 535 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRXTCTCLALTNVG 714
+ + LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+ T L LT V
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVK 198
Query: 715 VL*PRFFFEVVGSHQDNFQRAYEELRKHLG 804
F +++ + + NF YEE RK G
Sbjct: 199 NEDKLEFSKILEAIKANFNDKYEEYRKKWG 228
Score = 82.2 bits (194), Expect = 4e-16
Identities = 36/55 (65%), Positives = 45/55 (81%)
Frame = +3
Query: 243 LVQIVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 407
L + ++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK A LFKIL KYRPE
Sbjct: 42 LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE 96
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 178 NPLFEKRPKNFAIGQGIQPTRDLSRL*DGP-SISASSARRL 297
NPLFE+RPK F IG + P +DLSR P SI +R+
Sbjct: 20 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 60
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 722 DRASSSKSXEAIKTTFNERTRSSASTWGXGV 814
D+ SK EAIK FN++ WG G+
Sbjct: 201 DKLEFSKILEAIKANFNDKYEEYRKKWGGGI 231
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 532 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GALVHRXTCTCLAL 702
R + L VIA ++ PI+++ LP LC + GVPY V K L R TC L +
Sbjct: 63 RRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVM 121
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 553 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRXTCTCLALTN 708
VV+A D +P+E++L LP L VPY V K LG V R C +N
Sbjct: 86 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSN 139
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 553 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRXTCTCLALTN 708
VV+A D +P+E++L LP L VPY V K LG V R C +N
Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSN 107
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 553 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRXTCTCLALTN 708
VV+A D +P+E++L LP L VPY V K LG V R C +N
Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSN 107
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 553 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRXTCTCLALTN 708
+V+A D +P+E++L LP L VPY V K LG V R C +N
Sbjct: 54 IVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVTSN 107
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -3
Query: 503 SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 345
+ G+ P+ R +F + +S QP P CF L P L LE + +CS++ +
Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
>At4g16780.1 68417.m02535 homeobox-leucine zipper protein 4 (HAT4) /
HD-ZIP protein 4 SP|Q05466|HAT4_ARATH Homeobox-leucine
zipper protein HAT4 (HD-ZIP protein 4) (SP:Q05466)
[Arabidopsis thaliana] (HD-ZIP homeotic protein Athb-2
Length = 284
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 236 LVTCPDCKMAQVYPHPAPEGCTSASSESAP 325
L CP C+ V P P P+ TSA S P
Sbjct: 233 LTMCPSCEHVSV-PPPQPQAATSAHHRSLP 261
>At3g55580.1 68416.m06171 regulator of chromosome condensation
(RCC1) family protein UVB-resistance protein UVR8,
Arabidopsis thaliana, EMBL:AF130441; contains Pfam
PF00415: Regulator of chromosome condensation (RCC1)
domain
Length = 488
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 291 SGAGCGYTWAILQSGQVTSW 232
SG GCG+ A +SG++ +W
Sbjct: 69 SGGGCGFAMATAESGKLITW 88
>At4g21610.1 68417.m03132 zinc finger protein, putative similar to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 155
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +2
Query: 203 RTLLLVRAFSQL--VTCPDCKMAQVYPHPAPE-GCTSASSESAPSDQPIYPDTGQDYS*G 373
+T+ LV +Q+ V C +CK+ +YP+ AP C+S +S + S+ P + G
Sbjct: 85 QTVNLVLEANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDISENNKRPPWSEQQ--G 142
Query: 374 PFQDFGEIQ 400
P + ++
Sbjct: 143 PLKSLSSLR 151
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,098,434
Number of Sequences: 28952
Number of extensions: 304692
Number of successful extensions: 842
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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