Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0597
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    28   2.0  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   3.4  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    27   3.4  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   6.0  
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    26   7.9  

>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -2

Query: 418 VKDFDCSVNSITMSPTICKSAFVFSSTVFALV 323
           VKDF C  N+I+M   + K+   F S+VF+L+
Sbjct: 563 VKDFVCGANTISMQWNLQKN-MEFISSVFSLI 593


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 375 GDIVIELTEQSKSFTGLYTADTNVIGAVRYGYNLKND 485
           G IVI L +  +S   L+  D   I  + YG  +  D
Sbjct: 139 GSIVINLRDSGESLPPLFFHDDECISTIEYGKQITRD 175


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = +2

Query: 524 TCESIGEPKITLS---SDLSSALEKDSGNNSL--EPDMEPLKTLRQAAICKIAEACYISV 688
           +C  +   K  LS   S  SS L+KDS +NSL  EP +   K  +   +C      YI  
Sbjct: 249 SCLEVDSVKRLLSGSPSSSSSPLKKDSSSNSLTYEPALTDHKP-QYLVLCVYRSLIYIGD 307

Query: 689 VHNIRA 706
           VH   A
Sbjct: 308 VHRYLA 313


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 509 QPETFTCESIGEPKITLSSDLSSALEK 589
           +P+TF C+S  EP   ++S L    EK
Sbjct: 684 EPQTFNCDSFNEPGTEITSFLYDFDEK 710


>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/43 (27%), Positives = 27/43 (62%)
 Frame = +2

Query: 629 LKTLRQAAICKIAEACYISVVHNIRASGQNLTRVKFFEILIKF 757
           L+ + Q A+  + EA  + ++H++++SG N   +K + I+ K+
Sbjct: 458 LENINQYAVY-VEEAGGMDMIHDLQSSGNNDIYLKAYSIIEKY 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,443,383
Number of Sequences: 5004
Number of extensions: 69940
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)