Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0597
         (857 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z69385-1|CAA93424.2|  515|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL023844-4|CAA19529.1|  208|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z81062-14|CAB02947.2|  362|Caenorhabditis elegans Hypothetical p...    29   5.6  
Z93393-6|CAB07691.2|  495|Caenorhabditis elegans Hypothetical pr...    28   9.8  
AL034489-1|CAA22461.1|  538|Caenorhabditis elegans Hypothetical ...    28   9.8  

>AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical
           protein Y80D3A.7 protein.
          Length = 859

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -2

Query: 418 VKDFDCSVNSITMSPTICKSAFVFSST----VFALVSIWKSDICWFFKPVMFKFLKRITF 251
           V++  CS+   T++  +     V S+T     FA+ S   S +C+ ++ V+F  +  IT 
Sbjct: 321 VQEAGCSMTVTTVTNLVSFGNGVLSTTPVLQTFAIYSSVASVVCYIYQLVIFPAIIAITA 380

Query: 250 PHRWEQL 230
           P+ +++L
Sbjct: 381 PNEYQKL 387


>Z69385-1|CAA93424.2|  515|Caenorhabditis elegans Hypothetical
           protein ZK593.1 protein.
          Length = 515

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 557 LSSDLSSALEKDSGNNSLEPDMEPLKTLRQAAICKIAEACY-ISVVHNIRASGQNLTRVK 733
           + S+ SSA    S    L     P KT +   IC I  AC  +  +  +  +G N+ R+ 
Sbjct: 7   IGSEHSSATTNISHLCGLRISERPQKTRKTGVICTIGPACSDVETLRKMINTGMNIARLN 66

Query: 734 F 736
           F
Sbjct: 67  F 67


>AL023844-4|CAA19529.1|  208|Caenorhabditis elegans Hypothetical
           protein Y48A6B.5 protein.
          Length = 208

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = +3

Query: 375 GDIVIELTEQSKSFTGLYTADTNVIGAVR-----YGYNLKNDNGVQHFEVSR 515
           GD V++   + +   GLY A+  +  +V      YG+  K+DN VQ  EV R
Sbjct: 10  GDKVLDAIGEYRMGKGLYEANRRIFASVAGFVNVYGFRDKSDNLVQVIEVRR 61


>Z81062-14|CAB02947.2|  362|Caenorhabditis elegans Hypothetical
           protein F15A4.3 protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 394 NSITMSPTICKSAFVFSSTVFALVSIWKSDICWFFKPVMFKF 269
           N   +  T  +S F+ S  VF  + +W+ ++ W  + V  KF
Sbjct: 192 NRTPLLQTCLQSIFIGSVAVFGYIMLWRVNLAWRNRIVNLKF 233


>Z93393-6|CAB07691.2|  495|Caenorhabditis elegans Hypothetical
           protein Y48E1B.5 protein.
          Length = 495

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 133 SSATEQFLEKTSKGIPQYDIWPIDPLVVTSLDVIAPSD 246
           SS   Q L K     P  DI+PI P++  S+D I   D
Sbjct: 313 SSIFHQKLSKIFSAEPLPDIYPISPVIDFSMDTIYNDD 350


>AL034489-1|CAA22461.1|  538|Caenorhabditis elegans Hypothetical
           protein Y7A5A.1 protein.
          Length = 538

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 310 SDICWFFKPVMFKFLKRITFPHR-WEQLHPMTSQLV 206
           +D+CWF+KP  +K ++  TF  +  E+  P+ S L+
Sbjct: 289 NDVCWFYKPWFYKHVE--TFLKKGGEEYIPLESYLL 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,788,156
Number of Sequences: 27780
Number of extensions: 391338
Number of successful extensions: 942
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)