Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0597
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    29   0.072
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   8.3  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   8.3  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 28.7 bits (61), Expect = 0.072
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 124 QCLSSATEQFLEKTSKGIPQYDIWPIDPLVVTSLDV 231
           QC++ A    +   + G+  + I PI+PL V S+ +
Sbjct: 42  QCIAEAVRDAVVSLAGGLKSFKILPIEPLAVDSVKI 77


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 509 QPETFTCESIGEPKITLS 562
           +P TFTC   G P  T+S
Sbjct: 323 RPATFTCNVRGNPIKTVS 340


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/35 (25%), Positives = 14/35 (40%)
 Frame = +3

Query: 402 QSKSFTGLYTADTNVIGAVRYGYNLKNDNGVQHFE 506
           Q++   GLY  D N    + +       N   H+E
Sbjct: 13  QTQRIQGLYLLDNNDSSGIPHSAESSASNSPDHYE 47


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = +2

Query: 395 DRTIEVLHRTLHGRYKCHW 451
           +R IE     +   Y CHW
Sbjct: 178 NRLIEESSSVMEAAYSCHW 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,330
Number of Sequences: 438
Number of extensions: 4776
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)