Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0596
         (938 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0900 + 7091970-7092068,7092175-7093131,7093210-7093968,709...    31   1.3  
04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733     29   7.1  
08_01_0891 + 8775537-8776127,8776403-8776513                           28   9.3  
06_01_0277 - 2039129-2040280                                           28   9.3  

>01_01_0900 +
           7091970-7092068,7092175-7093131,7093210-7093968,
           7094322-7094366
          Length = 619

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -1

Query: 308 WCAAGRCSSLEPAVLRTNSRSRCSRSDPSIVSYST--SPRD*PDRLWR 171
           WC AGR   LE A  R  +R R S +DP +V+Y+T  S     D  WR
Sbjct: 235 WCDAGR---LEEA-WRVVARMRASGADPDVVTYNTLASAYAKNDETWR 278


>04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733
          Length = 760

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 268 TAGSRLEHRPAAHQNSNDSLGGWEDG 345
           T+GS LE  PAA Q+    LGG E G
Sbjct: 460 TSGSSLELVPAAEQHVESGLGGGEGG 485


>08_01_0891 + 8775537-8776127,8776403-8776513
          Length = 233

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 247 EREFVRSTAGSRLEHRPAAHQNSNDSLGGWEDGEFE 354
           E +     AG R  H  +A+ +    +GGWED +FE
Sbjct: 11  EADLPIGAAGER-RHACSANYDHRGGVGGWEDDDFE 45


>06_01_0277 - 2039129-2040280
          Length = 383

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -2

Query: 319 RCCSGARRGGAPASSRPCCGRTRVRAVHD 233
           RC SG  R   PAS+    GR  VR  HD
Sbjct: 175 RCLSGGPRAALPASNMGVDGRRWVRPRHD 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,520,258
Number of Sequences: 37544
Number of extensions: 308614
Number of successful extensions: 1065
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)