Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0596
         (938 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39441| Best HMM Match : SERTA (HMM E-Value=3.4)                     31   1.0  
SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)                   31   1.0  
SB_38431| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_24292| Best HMM Match : LTXXQ (HMM E-Value=1.7)                     29   7.2  
SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)               28   9.5  
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  28   9.5  

>SB_39441| Best HMM Match : SERTA (HMM E-Value=3.4)
          Length = 463

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +1

Query: 223 DGSDREQREREFVRSTAGSRLEHRPAAHQNSNDSLGGWEDGEFEPIEENADENNAS 390
           DG+D + R + F  +T     E RPA     + + G W + E     + AD  N S
Sbjct: 113 DGNDDDIRWQGFAVTTDKKLFEARPAKRTKLSKARGNWSNKEANSYNKRADSINES 168


>SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)
          Length = 1716

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
 Frame = +2

Query: 371  LMKTMLQRWT---SYEG-NEKRGNYKDRERWKRVVPLRAQGPMKLGTKIAQHRRPSRTNS 538
            + +T L  W     +EG N        RER  +  PLR   P    TK+++ R     + 
Sbjct: 1485 MYQTRLAMWNLIPGWEGSNSSTSRDGSRERLSKEHPLRDATPRGSKTKMSEERGKHHIDD 1544

Query: 539  NLHGRWISIR*FKKNRYLIIRL*REY--LENSSKTRERIF 652
            N + R +  R  +    +I RL R+Y  L+  S+T +R F
Sbjct: 1545 NDNHRALHQRTEEYYMNIIDRLKRDYQSLKEKSETEKREF 1584


>SB_38431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1042

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 510 STAALLERTQTYTDDGFQFGNLKK 581
           +T+ L +  + YT+DGFQ+ ++KK
Sbjct: 283 ATSVLRQLAENYTEDGFQYQDIKK 306


>SB_24292| Best HMM Match : LTXXQ (HMM E-Value=1.7)
          Length = 288

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = +3

Query: 171 PPK--PIWSVPRRRGITHNGRIRS*TARTRVRPQHGRL--EAGAPPRRA 305
           PP   P  S+PRRR  T   R R    R R     GR+  +   PPRRA
Sbjct: 37  PPSFTPRSSIPRRRSDTPKKRRRISVPRRRAGSAQGRITNKTKTPPRRA 85


>SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)
          Length = 353

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +1

Query: 172 RQSRSGQSLGDVE*LTMDGSDR--EQREREFVRSTAGSRLEHRPAAHQNSNDSLGGWEDG 345
           + S  GQS G V  LT  GS+R  EQ+E +     +G +     A  Q+ + S     + 
Sbjct: 210 KTSGQGQSAGSVPSLTSTGSERKPEQQENQQESGKSGKQPTEGDAREQSPSQSGSKQPNS 269

Query: 346 -EFEPIEENADENNAS 390
            E +   +N  ++++S
Sbjct: 270 EELQSTHQNTPQSSSS 285


>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +1

Query: 172 RQSRSGQSLGDVE*LTMDGSDR--EQREREFVRSTAGSRLEHRPAAHQNSNDSLGGWEDG 345
           + S  GQS G V  LT  GS+R  EQ+E +     +G +     A  Q+ + S     + 
Sbjct: 488 KTSGQGQSAGSVPSLTSTGSERKPEQQENQQESGKSGKQPTEGDAREQSPSQSGSKQPNS 547

Query: 346 -EFEPIEENADENNAS 390
            E +   +N  ++++S
Sbjct: 548 EELQSTHQNTPQSSSS 563


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,774,347
Number of Sequences: 59808
Number of extensions: 344972
Number of successful extensions: 849
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2740956230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)