Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0596
         (938 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   7.0  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   7.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   9.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   9.2  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +1

Query: 283 LEHRPAAHQNS---NDSLGGWEDGEFEPIEENAD 375
           L  +  AH N    + SL GW++ E+E + +  D
Sbjct: 20  LAQQAFAHSNQLIIDKSLKGWKEVEYEVVRDAYD 53


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = -1

Query: 305 CAAGRCSSLEPAVLRTNSRSRCSRSDPSIVSYSTSPRD*PDRLWRTV 165
           CA G   S    +  +  +  CS++    + +  S RD   R W ++
Sbjct: 79  CAEGMQCSCNKCIGCSAEKFECSKTSNPCLPHRNSDRDLNIRKWSSI 125


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 296 GRCSSLEPAVLRTNSRSRCSRSDP 225
           G   +LE   L  N   RCS S+P
Sbjct: 292 GSVLALEAVTLEDNGIYRCSASNP 315


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 296 GRCSSLEPAVLRTNSRSRCSRSDP 225
           G   +LE   L  N   RCS S+P
Sbjct: 292 GSVLALEAVTLEDNGIYRCSASNP 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,112
Number of Sequences: 438
Number of extensions: 3700
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)