BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0595 (459 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 23 1.2 AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 1.2 DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II lar... 23 2.1 DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 22 2.8 AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 21 6.4 AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 6.4 AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 6.4 AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 6.4 AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 6.4 >AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. Length = 602 Score = 23.4 bits (48), Expect = 1.2 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = -1 Query: 198 LSVQISAP*TVPV-HRLYSPPRLGTFPCPILPS 103 L Q+S T P+ +RLY+P + + P P PS Sbjct: 412 LRPQVSPDRTSPMEYRLYNPALIQSQPSPQYPS 444 >AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate receptor protein. Length = 1040 Score = 23.4 bits (48), Expect = 1.2 Identities = 10/29 (34%), Positives = 13/29 (44%) Frame = -3 Query: 385 CSQFSFIHSSTKRVLFHWCCWHVFLFTAH 299 CS + + K V CCWH F T + Sbjct: 587 CSLPCEVGQAKKYVAGEQCCWHCFNCTQY 615 >DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II large subunit protein. Length = 296 Score = 22.6 bits (46), Expect = 2.1 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = -1 Query: 258 HGHPVM*LLCKRLFVSLAGPL 196 HG VM +LCK+ + AG L Sbjct: 93 HGELVMGILCKKTLGTSAGSL 113 >DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine receptor beta2subunit protein. Length = 427 Score = 22.2 bits (45), Expect = 2.8 Identities = 14/61 (22%), Positives = 28/61 (45%) Frame = -2 Query: 293 VLRRYSSI*NCPMVIP*CDSFANDFLSLWLDPCQCKYLRLEQYRFIVCIHLHVWVHFLAP 114 +LRR+ S+ + V ++LWL+P + + + FI+ + + V + P Sbjct: 238 LLRRHYSMNSTTYVTLTIVLMTMTLMTLWLEPSSTERMIIANLNFILHLFCLLDVQWRIP 297 Query: 113 F 111 F Sbjct: 298 F 298 >AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-activated ion channelvariant T protein. Length = 288 Score = 21.0 bits (42), Expect = 6.4 Identities = 7/11 (63%), Positives = 7/11 (63%) Frame = -3 Query: 400 WHIHGCSQFSF 368 W IH CS F F Sbjct: 79 WVIHPCSSFRF 89 >AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-activated ion channelvariant L protein. Length = 664 Score = 21.0 bits (42), Expect = 6.4 Identities = 7/11 (63%), Positives = 7/11 (63%) Frame = -3 Query: 400 WHIHGCSQFSF 368 W IH CS F F Sbjct: 79 WVIHPCSSFRF 89 >AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-activated ion channel protein. Length = 632 Score = 21.0 bits (42), Expect = 6.4 Identities = 7/11 (63%), Positives = 7/11 (63%) Frame = -3 Query: 400 WHIHGCSQFSF 368 W IH CS F F Sbjct: 79 WVIHPCSSFRF 89 >AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule AbsCAM-Ig7B protein. Length = 1923 Score = 21.0 bits (42), Expect = 6.4 Identities = 8/18 (44%), Positives = 12/18 (66%) Frame = -1 Query: 333 GAAGTSSSLLPMTSTKAL 280 G + TSS + PM+ K+L Sbjct: 1821 GTSSTSSDISPMSEQKSL 1838 >AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member AbsCAM-Ig7A protein. Length = 1919 Score = 21.0 bits (42), Expect = 6.4 Identities = 8/18 (44%), Positives = 12/18 (66%) Frame = -1 Query: 333 GAAGTSSSLLPMTSTKAL 280 G + TSS + PM+ K+L Sbjct: 1817 GTSSTSSDISPMSEQKSL 1834 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 124,424 Number of Sequences: 438 Number of extensions: 2654 Number of successful extensions: 9 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9 length of database: 146,343 effective HSP length: 53 effective length of database: 123,129 effective search space used: 12189771 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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