Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0595
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   1.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.2  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   2.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   2.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   6.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.4  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 198 LSVQISAP*TVPV-HRLYSPPRLGTFPCPILPS 103
           L  Q+S   T P+ +RLY+P  + + P P  PS
Sbjct: 412 LRPQVSPDRTSPMEYRLYNPALIQSQPSPQYPS 444


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 385 CSQFSFIHSSTKRVLFHWCCWHVFLFTAH 299
           CS    +  + K V    CCWH F  T +
Sbjct: 587 CSLPCEVGQAKKYVAGEQCCWHCFNCTQY 615


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 258 HGHPVM*LLCKRLFVSLAGPL 196
           HG  VM +LCK+   + AG L
Sbjct: 93  HGELVMGILCKKTLGTSAGSL 113


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = -2

Query: 293 VLRRYSSI*NCPMVIP*CDSFANDFLSLWLDPCQCKYLRLEQYRFIVCIHLHVWVHFLAP 114
           +LRR+ S+ +   V           ++LWL+P   + + +    FI+ +   + V +  P
Sbjct: 238 LLRRHYSMNSTTYVTLTIVLMTMTLMTLWLEPSSTERMIIANLNFILHLFCLLDVQWRIP 297

Query: 113 F 111
           F
Sbjct: 298 F 298


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 400 WHIHGCSQFSF 368
           W IH CS F F
Sbjct: 79  WVIHPCSSFRF 89


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 400 WHIHGCSQFSF 368
           W IH CS F F
Sbjct: 79  WVIHPCSSFRF 89


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 400 WHIHGCSQFSF 368
           W IH CS F F
Sbjct: 79  WVIHPCSSFRF 89


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 333  GAAGTSSSLLPMTSTKAL 280
            G + TSS + PM+  K+L
Sbjct: 1821 GTSSTSSDISPMSEQKSL 1838


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 333  GAAGTSSSLLPMTSTKAL 280
            G + TSS + PM+  K+L
Sbjct: 1817 GTSSTSSDISPMSEQKSL 1834


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,424
Number of Sequences: 438
Number of extensions: 2654
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)