Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0595
(459 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g21280.1 68416.m02689 ubiquitin-specific protease 7, putative... 64 6e-11
At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative... 60 7e-10
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f... 41 5e-04
At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25) ... 38 0.003
At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative... 38 0.003
At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase f... 37 0.006
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 36 0.013
At5g42220.1 68418.m05139 ubiquitin family protein contains INTER... 36 0.017
At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative... 36 0.017
At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative... 36 0.017
At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase f... 36 0.017
At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase f... 36 0.017
At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase f... 36 0.017
At4g30890.2 68417.m04387 ubiquitin-specific protease 24, putativ... 34 0.040
At4g30890.1 68417.m04386 ubiquitin-specific protease 24, putativ... 34 0.040
At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putativ... 34 0.053
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 34 0.053
At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26) ... 34 0.053
At5g49570.1 68418.m06135 transglutaminase-like family protein lo... 33 0.12
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ... 33 0.12
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f... 32 0.21
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 31 0.28
At3g20630.1 68416.m02610 ubiquitin-specific protease 14, putativ... 31 0.37
At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22) ... 31 0.49
At4g06599.1 68417.m01024 ubiquitin family protein contains Pfam ... 31 0.49
At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative... 31 0.49
At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2) id... 30 0.65
At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putativ... 30 0.86
At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putativ... 28 2.6
At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putativ... 28 2.6
At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3) id... 27 4.6
At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4) id... 27 4.6
At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ... 27 6.1
At5g10910.1 68418.m01266 mraW methylase family protein contains ... 27 8.1
At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12) ... 27 8.1
At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12) ... 27 8.1
At3g28730.1 68416.m03587 structure-specific recognition protein ... 27 8.1
At3g11910.1 68416.m01460 ubiquitin-specific protease, putative s... 27 8.1
>At3g21280.1 68416.m02689 ubiquitin-specific protease 7, putative
(UBP7) similar to GI:11993467
Length = 532
Score = 63.7 bits (148), Expect = 6e-11
Identities = 25/53 (47%), Positives = 40/53 (75%)
Frame = +3
Query: 96 VSVKVKWGKEMYPDVEVNTDDEPVLFKAQIFALTGVQPERQKVVCKGVTLRDD 254
++V VKW K+++ +E++T P +FKAQ++ L+GV PERQK++ KG L+DD
Sbjct: 57 LTVSVKWQKKVFESIEIDTSQPPFVFKAQLYDLSGVPPERQKIMVKGGLLKDD 109
Score = 56.8 bits (131), Expect = 7e-09
Identities = 27/67 (40%), Positives = 39/67 (58%)
Frame = +2
Query: 257 WGNFKLTNNALVLVMGSKEEDVPAAPVEQHTFCRRMNEAELATAMDMPXGLINLGNTCYM 436
W L N +++MG+ +E V A P + F + E + A + GL+NLGNTCYM
Sbjct: 112 WSTLGLKNGQKLMMMGTADEIVKA-PEKGPVFMEDLPEEQQAANLGYSAGLVNLGNTCYM 170
Query: 437 NATVQCL 457
N+T+QCL
Sbjct: 171 NSTMQCL 177
>At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative
(UBP6) similar to GI:11993465
Length = 482
Score = 60.1 bits (139), Expect = 7e-10
Identities = 28/56 (50%), Positives = 39/56 (69%)
Frame = +3
Query: 87 MPNVSVKVKWGKEMYPDVEVNTDDEPVLFKAQIFALTGVQPERQKVVCKGVTLRDD 254
MP VSVK W K++ +E++ P +FKAQ++ LTGV PERQK++ KG L+DD
Sbjct: 1 MPTVSVK--WQKKVLDGIEIDVSLPPYVFKAQLYDLTGVPPERQKIMVKGGLLKDD 54
Score = 57.6 bits (133), Expect = 4e-09
Identities = 28/67 (41%), Positives = 40/67 (59%)
Frame = +2
Query: 257 WGNFKLTNNALVLVMGSKEEDVPAAPVEQHTFCRRMNEAELATAMDMPXGLINLGNTCYM 436
W + + +++MG+ +E V A P + F + E LAT + GL+NLGNTCYM
Sbjct: 57 WAAIGVKDGQKLMMMGTADEIVKA-PEKAIVFAEDLPEEALATNLGYSAGLVNLGNTCYM 115
Query: 437 NATVQCL 457
N+TVQCL
Sbjct: 116 NSTVQCL 122
>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 16 (UBP16)
[Arabidopsis thaliana] GI:11993477; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 731
Score = 40.7 bits (91), Expect = 5e-04
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +2
Query: 305 SKEEDVPAAPVEQHTFCRRMNEAELATAMDM-PXGLINLGNTCYMNATVQCL 457
S ++ P++ +++ +F + +++ P GL+NLGN+CY NA +QCL
Sbjct: 296 SSKKSQPSSSIDEMSFSYELFVKLYCDRVELQPFGLVNLGNSCYANAVLQCL 347
>At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25)
similar to GI:11993490
Length = 661
Score = 37.9 bits (84), Expect = 0.003
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +2
Query: 398 PXGLINLGNTCYMNATVQCL 457
P GL NLGNTCY+N+ +QCL
Sbjct: 23 PLGLRNLGNTCYLNSVLQCL 42
>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative
(UBP5) similar to GI:6648604
Length = 924
Score = 37.9 bits (84), Expect = 0.003
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +2
Query: 404 GLINLGNTCYMNATVQCL 457
GL+NLGNTC+MN+ +QCL
Sbjct: 318 GLLNLGNTCFMNSAIQCL 335
>At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 892
Score = 37.1 bits (82), Expect = 0.006
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +2
Query: 404 GLINLGNTCYMNATVQCL 457
GL NLGNTC+MN+T+QCL
Sbjct: 302 GLQNLGNTCFMNSTLQCL 319
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 35.9 bits (79), Expect = 0.013
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Frame = +2
Query: 188 CTDRGPARETKSRLQRSHITG*PWGNFKLTNNALVLVMGSKEEDVPAA----PVEQHTFC 355
C D G T S P+G+ ++ AL+ G + + P E+
Sbjct: 98 CRDYGITTLTPSAKNGLRFRASPFGDSSASSIALISERGQNKSSLKPREVLFPYEEFVEY 157
Query: 356 RRMNEAELATAMDMPXGLINLGNTCYMNATVQCL 457
+ ELA P GL+N GN+C+ N +QCL
Sbjct: 158 FNWDNPELA-----PCGLMNCGNSCFANVILQCL 186
>At5g42220.1 68418.m05139 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 879
Score = 35.5 bits (78), Expect = 0.017
Identities = 15/39 (38%), Positives = 27/39 (69%)
Frame = +3
Query: 141 EVNTDDEPVLFKAQIFALTGVQPERQKVVCKGVTLRDDH 257
+VN ++ +LFK +I + TGV +Q+++ +G L+DDH
Sbjct: 39 QVNKNETVLLFKEKIASETGVPVGQQRLIFRGRVLKDDH 77
>At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative
(UBP8) similar to ubiquitin-specific protease 8 partial
sequence GI:11993469 [Arabidopsis thaliana]
Length = 622
Score = 35.5 bits (78), Expect = 0.017
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +2
Query: 404 GLINLGNTCYMNATVQCL 457
GL NLGNTC+MN+++QCL
Sbjct: 31 GLQNLGNTCFMNSSLQCL 48
>At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative
(UBP8) similar to ubiquitin-specific protease 8 partial
sequence GI:11993469 [Arabidopsis thaliana]
Length = 622
Score = 35.5 bits (78), Expect = 0.017
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +2
Query: 404 GLINLGNTCYMNATVQCL 457
GL NLGNTC+MN+++QCL
Sbjct: 31 GLQNLGNTCFMNSSLQCL 48
>At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 35.5 bits (78), Expect = 0.017
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +2
Query: 404 GLINLGNTCYMNATVQCL 457
GL NLGNTC+MN+ +QCL
Sbjct: 304 GLSNLGNTCFMNSALQCL 321
>At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 35.5 bits (78), Expect = 0.017
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +2
Query: 404 GLINLGNTCYMNATVQCL 457
GL NLGNTC+MN+ +QCL
Sbjct: 304 GLSNLGNTCFMNSALQCL 321
>At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 923
Score = 35.5 bits (78), Expect = 0.017
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +2
Query: 404 GLINLGNTCYMNATVQCL 457
GL NLGNTC+MN+ +QCL
Sbjct: 305 GLSNLGNTCFMNSALQCL 322
>At4g30890.2 68417.m04387 ubiquitin-specific protease 24, putative
(UBP24) identical to ubiquitin-specific protease 24
[Arabidopsis thaliana] GI:11993488
Length = 551
Score = 34.3 bits (75), Expect = 0.040
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 398 PXGLINLGNTCYMNATVQCL 457
P GLIN GN C++NAT+Q L
Sbjct: 196 PRGLINAGNLCFLNATLQAL 215
>At4g30890.1 68417.m04386 ubiquitin-specific protease 24, putative
(UBP24) identical to ubiquitin-specific protease 24
[Arabidopsis thaliana] GI:11993488
Length = 551
Score = 34.3 bits (75), Expect = 0.040
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 398 PXGLINLGNTCYMNATVQCL 457
P GLIN GN C++NAT+Q L
Sbjct: 196 PRGLINAGNLCFLNATLQAL 215
>At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putative
(UBP23) identical to GI:11993486
Length = 859
Score = 33.9 bits (74), Expect = 0.053
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +2
Query: 404 GLINLGNTCYMNATVQCL 457
GL NLGNTC++N+ +QCL
Sbjct: 108 GLQNLGNTCFLNSVLQCL 125
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 33.9 bits (74), Expect = 0.053
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 398 PXGLINLGNTCYMNATVQCL 457
P GLIN+GN+C+ N QCL
Sbjct: 541 PCGLINVGNSCFANVVFQCL 560
>At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26)
similar to GI:11993492; RNA binding protein - Homo
sapiens, EMBL:AB016089 (N-terminus), several ubiquitin
carboxyl-terminal hydrolases from aa pos. 712
Length = 1067
Score = 33.9 bits (74), Expect = 0.053
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 398 PXGLINLGNTCYMNATVQCL 457
P GL NLG TCY N+ +QCL
Sbjct: 105 PAGLTNLGATCYANSILQCL 124
>At5g49570.1 68418.m06135 transglutaminase-like family protein low
similarity to peptide:N-glycanase PNGase [Mus musculus]
GI:8347622; contains Pfam profile PF01841:
Transglutaminase-like superfamily
Length = 721
Score = 32.7 bits (71), Expect = 0.12
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 135 DVEVNTDDEPVLFKAQIFALTGVQPERQKVVCK 233
DV+ NT+D + + IF+LT V PE QK+V +
Sbjct: 16 DVDYNTEDGLEVLRFLIFSLTLVPPEEQKIVAE 48
>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
almost identical to ubiquitin-specific protease 15
GI:11993475 [Arabidopsis thaliana], 7 amino acid
difference
Length = 924
Score = 32.7 bits (71), Expect = 0.12
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 398 PXGLINLGNTCYMNATVQCL 457
P GL+N GN+CY NA +Q L
Sbjct: 437 PRGLVNCGNSCYANAVLQSL 456
>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 672
Score = 31.9 bits (69), Expect = 0.21
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 398 PXGLINLGNTCYMNATVQCL 457
P GL N GN+C+ N +QCL
Sbjct: 173 PCGLTNCGNSCFANVVLQCL 192
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 31.5 bits (68), Expect = 0.28
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 96 VSVKVKWGKEMYPDVEVNTDDEPVLFKAQIFALTGVQPERQKVVCKGVTLRDD 254
+ +KVK E D+E+ D K +I G+ P Q++V G L DD
Sbjct: 1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADD 53
>At3g20630.1 68416.m02610 ubiquitin-specific protease 14, putative
(UBP14) similar to ubiquitin-specific protease 14
GI:11993473 [Arabidopsis thaliana]
Length = 797
Score = 31.1 bits (67), Expect = 0.37
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +2
Query: 404 GLINLGNTCYMNATVQ 451
GL+NLGN+CY+ AT+Q
Sbjct: 309 GLVNLGNSCYLAATMQ 324
>At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22)
almost identical to ubiquitin-specific protease 22
GI:11993484 [Arabidopsis thaliana], one amino acid
difference
Length = 557
Score = 30.7 bits (66), Expect = 0.49
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +2
Query: 404 GLINLGNTCYMNATVQCL 457
GL NLG+TC+MNA +Q L
Sbjct: 178 GLNNLGSTCFMNAVLQAL 195
>At4g06599.1 68417.m01024 ubiquitin family protein contains Pfam
domian PF00240: Ubiquitin family
Length = 340
Score = 30.7 bits (66), Expect = 0.49
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 96 VSVKVKWGKEMYPDVEVNTDDEPVLFKAQIFALTGVQPERQKVVCK--GVTLRDD 254
+++ VKW + Y V + DD K +I LT V P+RQK++ G L DD
Sbjct: 24 LTLTVKWNGKEYT-VRICADDSVAELKRRICLLTTVLPKRQKLLYPKIGNKLSDD 77
>At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative
(UBP1) similar to GI:11993461
Length = 1083
Score = 30.7 bits (66), Expect = 0.49
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 404 GLINLGNTCYMNATVQCL 457
GL+NLGNTC+ N+ +Q L
Sbjct: 203 GLVNLGNTCFFNSVMQNL 220
>At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2)
identical to GI:11993463
Length = 961
Score = 30.3 bits (65), Expect = 0.65
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 404 GLINLGNTCYMNATVQCL 457
GL+NLGNTC+ N+ +Q L
Sbjct: 232 GLVNLGNTCFFNSIMQNL 249
>At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putative
(UBP20) identical to ubiquitin-specific protease 20
GI:11993480 [Arabidopsis thaliana]
Length = 695
Score = 29.9 bits (64), Expect = 0.86
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 404 GLINLGNTCYMNATVQC 454
GL NLGN+C++N+ QC
Sbjct: 177 GLWNLGNSCFLNSVFQC 193
>At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putative
(UBP27) similar to GI:11993494; ubiquitin specific
protease 66 - Gallus gallus,PID:g3800764
Length = 361
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Frame = +2
Query: 338 EQHTFCRRMNEAELATAMD--------MPXGLINLGNTCYMNATVQCL 457
+QH R +N +L + + + GL NLGN C++N +Q L
Sbjct: 45 QQHGLFRNLNNLKLFSGREKDSGDDSFLVPGLQNLGNNCFLNVILQAL 92
>At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putative
(UBP27) similar to GI:11993494; ubiquitin specific
protease 66 - Gallus gallus,PID:g3800764
Length = 494
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Frame = +2
Query: 338 EQHTFCRRMNEAELATAMD--------MPXGLINLGNTCYMNATVQCL 457
+QH R +N +L + + + GL NLGN C++N +Q L
Sbjct: 45 QQHGLFRNLNNLKLFSGREKDSGDDSFLVPGLQNLGNNCFLNVILQAL 92
>At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3)
identical to GI:2347098
Length = 371
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 404 GLINLGNTCYMNATVQCL 457
G N GNTCY N+ +Q L
Sbjct: 24 GFENFGNTCYCNSVLQAL 41
>At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4)
identical to GI:2347100
Length = 365
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 404 GLINLGNTCYMNATVQCL 457
G N GNTCY N+ +Q L
Sbjct: 24 GFENFGNTCYCNSVLQAL 41
>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
identical to ubiquitin-specific protease 21 GI:11993482
[Arabidopsis thaliana]
Length = 732
Score = 27.1 bits (57), Expect = 6.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 404 GLINLGNTCYMNATVQC 454
GL N GNTC++ + +QC
Sbjct: 164 GLYNSGNTCFIASVLQC 180
>At5g10910.1 68418.m01266 mraW methylase family protein contains
Pfam profile PF01795: MraW methylase family
Length = 434
Score = 26.6 bits (56), Expect = 8.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 372 ASFILRQNVCCSTGAAGTSSSLLPMTSTKALFVNL 268
+S LR V C+ GAAG SSS++ S FV +
Sbjct: 108 SSVRLRSFVDCTLGAAGHSSSIIQSHSELKNFVGM 142
>At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1115
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 404 GLINLGNTCYMNATVQCL 457
GL N G TCYMN+ +Q L
Sbjct: 199 GLKNQGATCYMNSLLQTL 216
>At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1116
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 404 GLINLGNTCYMNATVQCL 457
GL N G TCYMN+ +Q L
Sbjct: 200 GLKNQGATCYMNSLLQTL 217
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 26.6 bits (56), Expect = 8.1
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 242 ITG*PWGNFKLTNNALVLVMGSKEE-DVPAAPVEQHTFCRRMNEAELATAMDMPXG 406
++G WG L N L ++GSK+ +V A V Q T + N+ L +D G
Sbjct: 104 VSGRNWGEVDLHGNTLTFLVGSKQAFEVSLADVSQ-TQLQGKNDVTLEFHVDDTAG 158
>At3g11910.1 68416.m01460 ubiquitin-specific protease, putative
strong similarity to ubiquitin-specific protease 12
(UBP12) [Arabidopsis thaliana] GI:11993471; contains
Pfam profiles PF00443: Ubiquitin carboxyl-terminal
hydrolase, PF00917: MATH domain
Length = 1115
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 404 GLINLGNTCYMNATVQCL 457
GL N G TCYMN+ +Q L
Sbjct: 199 GLKNQGATCYMNSLLQTL 216
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,712,170
Number of Sequences: 28952
Number of extensions: 191293
Number of successful extensions: 474
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -