Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0594
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane synthase|Schiz... 27 1.7
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 2.2
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.9
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.9
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 3.8
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 26 5.1
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 26 5.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 6.7
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 8.8
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.8
>SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 336
Score = 27.5 bits (58), Expect = 1.7
Identities = 29/97 (29%), Positives = 42/97 (43%)
Frame = -2
Query: 578 VARGPEGNAVQGSASRSPGSLAGFRPGRDGICWRSLVGSQTADVDVR*TRATADSYIDDV 399
VA P G+ V S+ R LA P + R VG++ A +D + D +
Sbjct: 123 VADLPPGSVVGTSSIRRRALLARNFPHLRFVDIRGNVGTRLAKLDA--PDSQFDCLVLAA 180
Query: 398 CSVSDNGVIGRIAQVIVDALPFLAVGGLARKVIVRRD 288
+ G+ RIAQ++ + AVG A V VR D
Sbjct: 181 AGLFRLGLKDRIAQMLTAPFVYYAVGQGALAVEVRAD 217
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 322 PTAKKGSASTITCAMRPITPLSLTEQTSSI*ESAVARVHRTST 450
P + +T TC+ RP +S TS++ ES + TST
Sbjct: 567 PEETTTTMTTTTCSSRPEETISTVSTTSTVSESGSSSASITST 609
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 374 IGRIAQVIVDALPFLAVGGLARKVIVRRDARHQGRWSPISTL 249
+GR+A+V++D L G A + + R +R G ++P+ L
Sbjct: 1313 LGRLARVVIDEAHLLLTSG-AWRTALSRASRLSGLYAPLHLL 1353
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 374 IGRIAQVIVDALPFLAVGGLARKVIVRRDARHQGRWSPISTL 249
+GR+A+V++D L G A + + R +R G ++P+ L
Sbjct: 1313 LGRLARVVIDEAHLLLTSG-AWRTALSRASRLSGLYAPLHLL 1353
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = +1
Query: 241 TQPSVLIGLHRPWCLASLRTMTFRARPPTAKKGSASTITCAMRPITPLSLTEQTSS 408
TQPS + R + +T T+ P+A A T C + P+ + ++ ++
Sbjct: 246 TQPSTVTSTQRKNTATTTKTTTYVGPSPSASSVVAYTTKCIVVPVITTAASQSEAA 301
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 25.8 bits (54), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 262 GLHRPWCL 285
GLHRPWCL
Sbjct: 685 GLHRPWCL 692
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 25.8 bits (54), Expect = 5.1
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -2
Query: 404 DVCSVSDNGVIGRIAQVIVDALPFLAV 324
++ + NG++ RI QV+ D L +L++
Sbjct: 304 EIDEIGVNGIVERIKQVVGDTLVYLSI 330
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 6.7
Identities = 18/84 (21%), Positives = 32/84 (38%)
Frame = +1
Query: 319 PPTAKKGSASTITCAMRPITPLSLTEQTSSI*ESAVARVHRTSTSAVWLPTRDRQQIPSR 498
PP + +S RPI P+S+ +S + + ++A + R P
Sbjct: 257 PPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPP 316
Query: 499 PGRNPANEPGLRLAEP*TALPSGP 570
P R +P + ++LP P
Sbjct: 317 PSRRNRGKPPIGNGSSNSSLPPPP 340
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 25.0 bits (52), Expect = 8.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 343 HSPSWPSEVWHERSSFVETP 284
HS ++P+E+W R E P
Sbjct: 45 HSLTFPTEIWETRDGLFEEP 64
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 463 LPTRDRQQIPSRPGRNPA 516
LP+R +PSRPG P+
Sbjct: 114 LPSRGTPSLPSRPGSRPS 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,086
Number of Sequences: 5004
Number of extensions: 45925
Number of successful extensions: 131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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