Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0594
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0498 + 3734498-3734976,3736176-3736800                           32   0.42 
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787...    30   1.7  
11_01_0449 - 3473662-3475049,3476026-3476128,3476215-3476439,347...    29   3.9  
02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033     29   3.9  
01_07_0078 - 40923115-40924016,40924341-40924416,40924686-40924718     29   3.9  
01_07_0137 - 41381294-41382433                                         28   6.9  
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769...    27   9.1  
05_06_0231 - 26587900-26587980,26588291-26588356,26588452-265885...    27   9.1  

>07_01_0498 + 3734498-3734976,3736176-3736800
          Length = 367

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 404 DVCSVSDNGVIGRIAQVIVDALPFLAVGGLARKV 303
           D    +D+GV+  IA  +VD   FLA GG+ R V
Sbjct: 26  DEAPAADDGVVEEIAIPVVDLAAFLASGGIGRDV 59


>05_05_0230 -
           23476919-23477372,23477656-23477695,23478578-23478700,
           23479114-23479151,23479289-23479674,23479875-23481053,
           23481805-23481928,23482733-23482779
          Length = 796

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
 Frame = +1

Query: 325 TAKKGSASTITCA-MRPITPLSLTEQTSSI*ESAVARVHRTSTSAVWLPTRDRQQI---P 492
           T+   +A T +    RP TP S +    +    A+  + R   S +   +R         
Sbjct: 166 TSDSAAARTTSAQNSRPSTPTSRSRAMPNSSSGAIPAMSRPGASTISATSRSNASTISAT 225

Query: 493 SRPGRNPANEPGLRLAEP*TALPSGPRATWTARPSSESSP 612
           SRPG + +N PG+  A   T+L S    + +   S  S+P
Sbjct: 226 SRPGSSSSNVPGISRA---TSLSSSTVPSMSRSSSRSSTP 262


>11_01_0449 -
           3473662-3475049,3476026-3476128,3476215-3476439,
           3476689-3476856,3477414-3477529,3477640-3477792,
           3477879-3478022,3478980-3479583
          Length = 966

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +1

Query: 211 SEPPTQLQPVTQPSVLIGLHRPWCLA 288
           S PPT L P   PS L  LH P  LA
Sbjct: 508 SSPPTSLLPSPSPSDLPSLHLPLALA 533


>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
          Length = 1614

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 620  DHPGELSELGLAVHVARGPE-GNAVQGSASRSPGSLAGFRPG 498
            +HP ++++L +A  V  GPE G + + S   S  S +  RPG
Sbjct: 1048 EHPADVTKLAVATGVKHGPENGISSKESKDNSSESSSHTRPG 1089


>01_07_0078 - 40923115-40924016,40924341-40924416,40924686-40924718
          Length = 336

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 469 TRDRQQIPSRPGRNPANEPGLRLAEP*TALPSGPRATWTARPSSESSP 612
           T+++    S+P   PA +PG   AE   A P+ P+ +     S++ +P
Sbjct: 98  TKNQSDESSKPSDQPAEKPGPDKAEGSAAEPNNPQPSPEPTKSTDETP 145


>01_07_0137 - 41381294-41382433
          Length = 379

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 320 GLARKVIVRRDARHQGRWSPISTLGCVTGCNCVGG 216
           G  R  + R + R +GRW P+  LG V     +GG
Sbjct: 275 GSRRYEVSRYEEREEGRWLPVEDLGEVAILVGIGG 309


>12_01_0831 -
           7688342-7688772,7690678-7692610,7693142-7693915,
           7694019-7694142,7696084-7696189,7696346-7696532
          Length = 1184

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 25/66 (37%), Positives = 29/66 (43%)
 Frame = +1

Query: 211 SEPPTQLQPVTQPSVLIGLHRPWCLASLRTMTFRARPPTAKKGSASTITCAMRPITPLSL 390
           S PP  LQP T PS      RP    S +T+T    PP      AST+T   R  +P S 
Sbjct: 175 SSPPFALQPPT-PS-----WRPSTPPSAKTLT----PPRRSPSPASTLTPPRRSPSPASR 224

Query: 391 TEQTSS 408
              T S
Sbjct: 225 RMSTGS 230


>05_06_0231 -
           26587900-26587980,26588291-26588356,26588452-26588597,
           26589182-26589374,26589465-26589515,26590165-26590311,
           26590365-26590463,26590557-26590760,26590839-26590887,
           26590979-26591074,26591367-26591457,26591753-26591823,
           26592170-26592222,26592740-26592828,26593322-26593517,
           26593975-26594088,26594217-26594291
          Length = 606

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 189 IDSRSPVSMFCAHADARKPMNRSLYIFGYYSQNITLTISNSQCSS 55
           +  R+ V + C+H D RKP  R + I   +S   TL I +  CSS
Sbjct: 380 VHDRAQVFVSCSHGDVRKP--RYVGIVERWSSK-TLQIPSLSCSS 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,857,555
Number of Sequences: 37544
Number of extensions: 384216
Number of successful extensions: 1128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)