Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0594
         (621 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46855| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)                    28   7.0  
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)                 28   7.0  
SB_8102| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_41658| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)                 27   9.3  
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)                    27   9.3  
SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)           27   9.3  

>SB_46855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = +1

Query: 364 MRPITPLSLTEQTSSI*ESAVARVHRTSTSAVWLPTRDRQQIPSRPGRNPANEPGLRLAE 543
           MR +   +  + TS+  E+A++  H        L     QQ+P  PG +   +PG RL  
Sbjct: 79  MRKLRSEAGDKATSNAKENALSATHGARAKKESLRVAAAQQLPVAPGPSEP-QPGRRLRA 137

Query: 544 P*TALPSGPRATWTAR-PSSESSPGWS 621
              A  +      +A  P+ ES+  WS
Sbjct: 138 DDAASGTANAGMPSAHTPAPESNSAWS 164


>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3255

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 398  CSVSDNGVIGRIAQVIVDALPFLAVGGLARKVIVRR 291
            C+VS+N V+G I   ++   P L  GG+    I+ R
Sbjct: 1903 CNVSENAVVGAIIAELLAVDPDLGTGGVVSYRILTR 1938


>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
          Length = 1197

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
 Frame = +1

Query: 361  AMRPITPLSLTEQTSSI*ESAVARVHRTSTSAVWLPTRDRQQIPSRPGRNPANEPGLRLA 540
            A  P++P +    T     S       +ST      +     +   PG  P++ PG   +
Sbjct: 965  ATSPVSPAAAPSTTPGAAPSTTPGAESSSTPGAASSSTPGAALSRTPGAAPSSTPGAASS 1024

Query: 541  EP*TALPSG-PRATWTARP--SSESSPG 615
                A PS  P A  ++ P  +S S+PG
Sbjct: 1025 TTPGAAPSSTPGAAMSSIPGATSSSTPG 1052


>SB_8102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 690

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 19  SRTRKILKPVTSRRALRVRYC*CDVLRIISKDVQASIHRLSRV 147
           S+T+K  +PV+ R++        DV R++  D   ++HR + V
Sbjct: 388 SKTQKNAEPVSERQSASRSTARADVKRLLETDTHVAMHRDTHV 430


>SB_41658| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 300 DDLSCQTSDGQEGECVNY 353
           DD+ CQ++DG + +C +Y
Sbjct: 104 DDIRCQSADGPQRKCASY 121


>SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)
          Length = 1199

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
 Frame = +1

Query: 319 PPTAKKGSASTITCAMRPITPLSLTEQTSSI*ESAVARVHRTSTSAVWLPTRDR-----Q 483
           P   +    S ++   RP+TP+  +  TSS+      +   T   +       +      
Sbjct: 577 PYPQRNAKLSAVSDFYRPVTPIKRSPSTSSVNSEGECKSSETERKSSGFNVASKALWSAA 636

Query: 484 QIPSRPGRNPANEPGLRL 537
           +   R GR+P N P L L
Sbjct: 637 KFKLRLGRSPTNSPKLSL 654


>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
          Length = 170

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 463 LPTRDRQQIPSRPGRNPANEPGLRLAEP*TALPSGPRATWTARPS 597
           +P +    +PS P + P++ P     +    LPS P  T T RPS
Sbjct: 88  IPAKPALNLPSPPSKTPSSVPPQAKVDETPLLPSPP--TSTPRPS 130


>SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)
          Length = 1057

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +1

Query: 460  WLPTRDRQQIPSRPGRNPANEPGLRLAEP*TALPSGPRATWTARPSSESSPG 615
            W P +D   I +R    P +  G  + +     P+ PR TWT+       PG
Sbjct: 936  WSPGKDSNTILTRESALPLSSRGGWVRDN-RRTPNSPRFTWTSPDKPLEGPG 986


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,772,330
Number of Sequences: 59808
Number of extensions: 408639
Number of successful extensions: 1244
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)