Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0594
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038613-12|AAB92046.3|  328|Caenorhabditis elegans Hypothetical...    30   1.5  
AC006661-10|AAF39887.1|  843|Caenorhabditis elegans Hypothetical...    30   1.5  
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    29   2.0  
AF045645-6|AAC02608.1|  314|Caenorhabditis elegans Collagen prot...    29   2.7  
AF022973-4|AAC25798.1|  314|Caenorhabditis elegans Temporarily a...    29   3.5  
U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astaci...    28   4.7  
AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL023828-22|CAA19467.2|  272|Caenorhabditis elegans Hypothetical...    28   6.2  
Z78064-2|CAB01508.2|  317|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AF038613-12|AAB92046.3|  328|Caenorhabditis elegans Hypothetical
           protein F42A6.1 protein.
          Length = 328

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 165 MFCAHADARKPMNRSLYIFGYYSQNITLTISNSQCS 58
           ++C  +DAR    R   +    S  +TLT+S S+C+
Sbjct: 25  LWCILSDARNRNRREFLLVASQSVTVTLTVSTSECA 60


>AC006661-10|AAF39887.1|  843|Caenorhabditis elegans Hypothetical
           protein H20J04.1 protein.
          Length = 843

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +2

Query: 110 KMYKLLFIGFLASACAQNMDTGDLESIINQIFTSANPRRNCSRSRSL 250
           K +KLLFIGFL   C  N+ T      ++   T A   R+     SL
Sbjct: 2   KYWKLLFIGFLIVNCHDNIPTSLTAQFVSGNATGAIVTRSAPEDSSL 48


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 9/139 (6%)
 Frame = +1

Query: 211 SEPPTQLQPVT---QPSVLIGLHRPWCLASLRTMTF---RARPPTAKKGSAS--TITCAM 366
           + P   ++P T   QP       RP+   S  T  +     + PT ++ +    T T   
Sbjct: 227 ARPAPYIEPSTAKPQPRPQPPRTRPYVAPSTTTQRYIEPTTQRPTTRRATTKRITTTTTA 286

Query: 367 RPITP-LSLTEQTSSI*ESAVARVHRTSTSAVWLPTRDRQQIPSRPGRNPANEPGLRLAE 543
            P TP L+    T+ +  ++       +T     P        +R    P+  P      
Sbjct: 287 APTTPRLTTARATTPLATTSRPTTPSPTTPRATTPLATTPLATTRAPLPPSPPPRTS-KR 345

Query: 544 P*TALPSGPRATWTARPSS 600
           P T  P+ PRAT T RP++
Sbjct: 346 PVTQAPTTPRATTTRRPTT 364


>AF045645-6|AAC02608.1|  314|Caenorhabditis elegans Collagen protein
           101 protein.
          Length = 314

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -2

Query: 614 PGELSELGLAVHVARGPEGNAVQGSASRSPGSLAGFRPGRDG 489
           PG+  + G A     GP+G+A    A   PGS AG +PG DG
Sbjct: 255 PGQPGQAGHAQPGQPGPQGDAGAPGAPGQPGS-AG-QPGNDG 294


>AF022973-4|AAC25798.1|  314|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 57 protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 13  TLSRTRKILKPVTSRRA-LRVRYC*CDVLRIISKDVQASIHRLSRVGVRAEHGHRGSGVD 189
           T S+  K  K + ++ + + VRY  CD  R+  +D +  +H L+ V +     + G   D
Sbjct: 86  TKSKLVKTKKQILNKYSDIEVRYAICDFTRVSYEDYKRLLHSLNEVDIGILINNVGMCFD 145

Query: 190 H*SDLH 207
           +   LH
Sbjct: 146 NPEVLH 151


>U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astacin
           protease protein38 protein.
          Length = 745

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 28/85 (32%), Positives = 36/85 (42%)
 Frame = +1

Query: 217 PPTQLQPVTQPSVLIGLHRPWCLASLRTMTFRARPPTAKKGSASTITCAMRPITPLSLTE 396
           PPT   P+ + S       P  + S  T T      TAKK   +      +PIT + LT 
Sbjct: 499 PPTTA-PLPEISETTQKPEPTTVQSTTTYTTAIPRRTAKKQFFTR-----KPIT-IPLTP 551

Query: 397 QTSSI*ESAVARVHRTSTSAVWLPT 471
            TSS   +    V  T+ S  WLPT
Sbjct: 552 LTSSSTTTESTTVSSTTQSTTWLPT 576


>AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical
           protein F54A3.1 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 21/69 (30%), Positives = 31/69 (44%)
 Frame = +1

Query: 313 ARPPTAKKGSASTITCAMRPITPLSLTEQTSSI*ESAVARVHRTSTSAVWLPTRDRQQIP 492
           ARP T+  G A+      R   P + +   +    SA + V R  T A  + +  R + P
Sbjct: 355 ARPQTSS-GIAAPGAPRSRIAMPTTSSSSLARRPGSASSSVPRVPTGAASMTSSSRIRPP 413

Query: 493 SRPGRNPAN 519
           SRPG  P +
Sbjct: 414 SRPGSRPGS 422


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 4/101 (3%)
 Frame = +1

Query: 232  QPVTQPSVLI----GLHRPWCLASLRTMTFRARPPTAKKGSASTITCAMRPITPLSLTEQ 399
            QP   P V++    G  +P  +  +  +T +A  PTA   SAST   A  P T    T +
Sbjct: 1498 QPAEIPRVVVPQSPGTPQP-VVPQVSIVTPQAPQPTAAATSASTGPIAPEPTTAAPTTTE 1556

Query: 400  TSSI*ESAVARVHRTSTSAVWLPTRDRQQIPSRPGRNPANE 522
            T+ +  S          +   +PT   + +  R     AN+
Sbjct: 1557 TTPLPPSLAPHPPAAHAAKTVIPTYKAEPVLGREQIPTAND 1597


>AL023828-22|CAA19467.2|  272|Caenorhabditis elegans Hypothetical
           protein Y17G7B.19 protein.
          Length = 272

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 360 CNAANNTIITDGTNVIDIRVGSGPCSSYID 449
           C +  ++I + G    ++ +  GPCS++ID
Sbjct: 101 CYSKKSSICSTGGTPFEVELSDGPCSNHID 130


>Z78064-2|CAB01508.2|  317|Caenorhabditis elegans Hypothetical
           protein F57B1.4 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -2

Query: 614 PGELSELGLAVHVARGPEGNAVQGSASRSPGSLAGFRPGRDG 489
           PG+  + G A     GP+G+A    A   PG  AG  PG+DG
Sbjct: 258 PGQPGQSGSAQPGGPGPQGDAGAPGAPGQPGQ-AG-APGQDG 297


>Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -3

Query: 610 GNSPNL--VSPSTSPVVRKATPFRVPPAAAL 524
           G+ P L   SPS++PVVRK   F V P++++
Sbjct: 679 GSLPALPQASPSSTPVVRKLRRFSVSPSSSV 709


>Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -3

Query: 610 GNSPNL--VSPSTSPVVRKATPFRVPPAAAL 524
           G+ P L   SPS++PVVRK   F V P++++
Sbjct: 684 GSLPALPQASPSSTPVVRKLRRFSVSPSSSV 714


>Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -3

Query: 610 GNSPNL--VSPSTSPVVRKATPFRVPPAAAL 524
           G+ P L   SPS++PVVRK   F V P++++
Sbjct: 679 GSLPALPQASPSSTPVVRKLRRFSVSPSSSV 709


>Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -3

Query: 610 GNSPNL--VSPSTSPVVRKATPFRVPPAAAL 524
           G+ P L   SPS++PVVRK   F V P++++
Sbjct: 684 GSLPALPQASPSSTPVVRKLRRFSVSPSSSV 714


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,007,688
Number of Sequences: 27780
Number of extensions: 285467
Number of successful extensions: 924
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)