Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0592
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 166 3e-42
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 106 3e-24
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 102 6e-23
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 98 1e-21
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 91 1e-19
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 89 5e-19
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 89 8e-19
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 85 1e-17
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 85 1e-17
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 82 9e-17
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 82 9e-17
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 81 2e-16
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 80 3e-16
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 80 3e-16
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 79 5e-16
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 78 2e-15
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 77 4e-15
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 76 5e-15
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 73 3e-14
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 69 9e-13
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 39 7e-04
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 34 0.025
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 32 0.099
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 31 0.17
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 31 0.17
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 31 0.23
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 29 0.92
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 29 0.92
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 28 1.2
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 28 1.6
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 27 3.7
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 27 3.7
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 4.9
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe... 26 6.5
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 6.5
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 26 6.5
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 25 8.6
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 166 bits (404), Expect = 3e-42
Identities = 78/84 (92%), Positives = 84/84 (100%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 182
GILMYGPPGTGKTL+ARAVANETGAFFFLINGPEIMSK+AGESESNLRKAFEEA+KNSPA
Sbjct: 260 GILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPA 319
Query: 183 IIFIDELDAIAPKREKTHGEVERR 254
IIFIDE+D+IAPKREKT+GEVERR
Sbjct: 320 IIFIDEIDSIAPKREKTNGEVERR 343
Score = 158 bits (384), Expect = 7e-40
Identities = 81/129 (62%), Positives = 92/129 (71%)
Frame = +2
Query: 257 VSQLLTLMDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIH 436
VSQLLTLMDGMK S+V+VMAATNRPNSIDPALRRFGRFDRE+D+GIPD TGRLEILRIH
Sbjct: 345 VSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEILRIH 404
Query: 437 TKNMKLGXXXXXXXXXXXXXXXXXXXXXXXXLGGQPCSRFREKMDLIDLEDDQIDAEVLN 616
TKNMKL + REKMD+IDL++D+IDAEVL+
Sbjct: 405 TKNMKLA-DDVDLEQIAAETHGYVGSDLASLCSEAAMQQIREKMDMIDLDEDEIDAEVLD 463
Query: 617 SLAVSMDNF 643
SL V+MDNF
Sbjct: 464 SLGVTMDNF 472
Score = 95.1 bits (226), Expect = 9e-21
Identities = 41/80 (51%), Positives = 59/80 (73%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 182
G+L +GPPGTGKTL+A+A+ANE A F + GPE++S GESESN+R F++A +P
Sbjct: 533 GVLFFGPPGTGKTLLAKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKARAAAPC 592
Query: 183 IIFIDELDAIAPKREKTHGE 242
++F+DELD+IA R + G+
Sbjct: 593 VVFLDELDSIAKARGASAGD 612
Score = 73.3 bits (172), Expect = 3e-14
Identities = 44/87 (50%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Frame = +3
Query: 468 NLEQIAAESHGHVGADLASLCSEGSLAADFVRR-WISLTSRTIRLTQRFSILWLSPWITF 644
+LEQIAAE+HG+VG+DLASLCSE ++ + I L I + L ++ F
Sbjct: 415 DLEQIAAETHGYVGSDLASLCSEAAMQQIREKMDMIDLDEDEID-AEVLDSLGVT-MDNF 472
Query: 645 RYAMTXSSPSALRETVVEVPNVTWTDI 725
R+A+ S+PSALRETVVEVPNV W DI
Sbjct: 473 RFALGSSNPSALRETVVEVPNVRWEDI 499
Score = 64.1 bits (149), Expect = 2e-11
Identities = 31/67 (46%), Positives = 42/67 (62%)
Frame = +2
Query: 245 GKTFVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEI 424
G V+QLLT MDG+ +V V+ ATNRP+ IDPAL R GR D+ I + +PD R I
Sbjct: 616 GDRVVNQLLTEMDGVNSKKNVFVIGATNRPDQIDPALMRPGRLDQLIYVPLPDEEARFSI 675
Query: 425 LRIHTKN 445
L+ ++
Sbjct: 676 LQTQLRH 682
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 106 bits (255), Expect = 3e-24
Identities = 48/85 (56%), Positives = 63/85 (74%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 182
G+L+YGPPGTGKT++ RAVA E A F I+GP ++ K GE+ES LRK FE+A + P+
Sbjct: 315 GVLLYGPPGTGKTMVMRAVAAEANAQVFTIDGPSVVGKYLGETESRLRKIFEDARAHQPS 374
Query: 183 IIFIDELDAIAPKREKTHGEVERRS 257
IIFIDE+DA+APKR + E E R+
Sbjct: 375 IIFIDEIDALAPKRTEDVSEAESRA 399
Score = 87.8 bits (208), Expect = 1e-18
Identities = 36/74 (48%), Positives = 52/74 (70%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 182
G+L+YGPPG KT+ A+A+A ETG F + GPE+ K GESE +R+ F++A + SP+
Sbjct: 584 GVLLYGPPGCSKTITAKAIATETGLNFIAVKGPELFDKFVGESERAVRQVFQKARQASPS 643
Query: 183 IIFIDELDAIAPKR 224
+IF DE+DA+ R
Sbjct: 644 VIFFDEIDALTANR 657
Score = 80.2 bits (189), Expect = 3e-16
Identities = 36/59 (61%), Positives = 49/59 (83%)
Frame = +2
Query: 257 VSQLLTLMDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRI 433
V+ LLTL+DGM + V+V+AATNRPNSID ALRR GR ++EI+IGIPD + RL+I+++
Sbjct: 400 VATLLTLLDGMANAGKVVVIAATNRPNSIDEALRRPGRLEKEIEIGIPDKSARLDIIKL 458
Score = 63.3 bits (147), Expect = 4e-11
Identities = 31/70 (44%), Positives = 46/70 (65%)
Frame = +2
Query: 242 SGKTFVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLE 421
S V+ LL +DG++ +V+V+AATNRP+ IDPAL R GR DR + +G P+ R +
Sbjct: 662 SSDRVVAALLNELDGIEALRNVLVLAATNRPDMIDPALMRPGRLDRLLYVGPPNFEARKQ 721
Query: 422 ILRIHTKNMK 451
I++I + MK
Sbjct: 722 IVKIQAEKMK 731
Score = 52.0 bits (119), Expect = 9e-08
Identities = 32/87 (36%), Positives = 49/87 (56%)
Frame = +3
Query: 465 SNLEQIAAESHGHVGADLASLCSEGSLAADFVRRWISLTSRTIRLTQRFSILWLSPWITF 644
+ LE +A+ +H +VGADLA++ E +L A ++R ISL T L I
Sbjct: 470 AQLEDLASRTHAYVGADLAAVVREAALRA--IKRTISLQKDTSGL----DIFGAVQMDDL 523
Query: 645 RYAMTXSSPSALRETVVEVPNVTWTDI 725
+A++ SA+RE ++E PNV W+DI
Sbjct: 524 EFALSSVRQSAMREFMMESPNVHWSDI 550
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 468 NLEQIAAESHGHVGADLASLCSEGSLAA 551
+L+ IA ++ G GA++ +LC E L A
Sbjct: 737 DLDLIAEKTEGCSGAEVVALCQEAGLIA 764
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 102 bits (244), Expect = 6e-23
Identities = 44/84 (52%), Positives = 62/84 (73%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 182
G+L++GPPG GKT++A A+ANE G F I+ P I+S ++GESE +R+ FEEA +P
Sbjct: 210 GVLLHGPPGCGKTMLANALANELGVPFISISAPSIVSGMSGESEKKVREVFEEAKSLAPC 269
Query: 183 IIFIDELDAIAPKREKTHGEVERR 254
++FIDE+DA+ PKRE E+ERR
Sbjct: 270 LMFIDEIDAVTPKRESAQREMERR 293
Score = 96.3 bits (229), Expect = 4e-21
Identities = 43/84 (51%), Positives = 60/84 (71%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 182
G+L++GPPG GKTL+A+AVANE+ A F I GPE+++K GESE +R+ F A +SP
Sbjct: 528 GVLLWGPPGCGKTLLAKAVANESKANFISIRGPELLNKYVGESERAVRQVFLRARASSPC 587
Query: 183 IIFIDELDAIAPKREKTHGEVERR 254
+IF DELDA+ P+R+ + E R
Sbjct: 588 VIFFDELDAMVPRRDDSLSEASSR 611
Score = 65.3 bits (152), Expect = 9e-12
Identities = 33/66 (50%), Positives = 45/66 (68%)
Frame = +2
Query: 257 VSQLLTLMDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIH 436
V+ LLT +DG+ S V V+AATNRP+ IDPA+ R GR D+ + + +PDA R+EIL+
Sbjct: 613 VNTLLTELDGLSDRSGVYVIAATNRPDIIDPAMLRPGRLDKTLLVDLPDAHERVEILKTL 672
Query: 437 TKNMKL 454
TK L
Sbjct: 673 TKQTPL 678
Score = 64.1 bits (149), Expect = 2e-11
Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Frame = +2
Query: 215 TKERENP-R*SGKTFVSQLLTLMDGMK----KSSHVIVMAATNRPNSIDPALRRFGRFDR 379
T +RE+ R + V+Q LT MD + V+V+ ATNRP+S+D ALRR GRFDR
Sbjct: 280 TPKRESAQREMERRIVAQFLTCMDELSFEKTDGKPVLVIGATNRPDSLDSALRRAGRFDR 339
Query: 380 EIDIGIPDATGRLEILRIHTKNMKL 454
EI + +P R +ILR K +KL
Sbjct: 340 EICLTVPSQDAREKILRTMAKGLKL 364
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 98.3 bits (234), Expect = 1e-21
Identities = 43/74 (58%), Positives = 56/74 (75%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 182
G+L+YGPPGTGKTL+A+AVA E F I GPE+++ GESE+N+R FE+A +SP
Sbjct: 690 GVLLYGPPGTGKTLLAKAVATELSLEFVSIKGPELLNMYVGESEANVRNVFEKARNSSPC 749
Query: 183 IIFIDELDAIAPKR 224
+IF DELD+IAP R
Sbjct: 750 VIFFDELDSIAPHR 763
Score = 53.2 bits (122), Expect = 4e-08
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Frame = +2
Query: 257 VSQLLTLMDGMKKSS--HVIVMAATNRPNSIDPALRRFGRFDREIDIGI-PDATGRLEIL 427
VSQLL +D + K + +V V+ ATNRP+ +DP+L R GRFD+ + +GI + +L
Sbjct: 777 VSQLLAELDSISKDNNKYVFVIGATNRPDLLDPSLLRPGRFDKLVYLGINKSEESKASML 836
Query: 428 RIHTKNMKL 454
R TK KL
Sbjct: 837 RALTKTFKL 845
Score = 38.7 bits (86), Expect = 9e-04
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = +3
Query: 9 LMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAII 188
L++G P TGKT VA+ A F I+ E A E+ L + K+ AII
Sbjct: 426 LLHGNPFTGKTKAVEEVASLFSAPVFTISSYEFADATADHLEAKLDMFVQNVVKSPCAII 485
Query: 189 FIDELDAIA 215
F+ +LD ++
Sbjct: 486 FVKDLDVLS 494
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 456 ETTSNLEQIAAESHGH-VGADLASLCSEGSLAA 551
+ T +L +IA H + GAD+ +LCS+ L+A
Sbjct: 846 DETIDLNEIAKNCHPNFTGADMYALCSDAVLSA 878
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 91.5 bits (217), Expect = 1e-19
Identities = 42/84 (50%), Positives = 59/84 (70%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 182
GIL+YGPPGTGK+ +A+AVA E G+ FF I+ +++SK GESE +R+ FE A + P+
Sbjct: 164 GILLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPS 223
Query: 183 IIFIDELDAIAPKREKTHGEVERR 254
IIFIDE+D++ R + E RR
Sbjct: 224 IIFIDEIDSLCGSRSEGESESSRR 247
Score = 43.2 bits (97), Expect = 4e-05
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +2
Query: 212 CTKERENPR*SGKTFVSQLLTLMDGM-KKSSHVIVMAATNRPNSIDPALRRFGRFDREID 388
C E S + ++ L M+G+ K S V+V+ ATN P ++D A+RR RF++ I
Sbjct: 234 CGSRSEGESESSRRIKTEFLVQMNGVGKDESGVLVLGATNIPWTLDSAIRR--RFEKRIY 291
Query: 389 IGIPDATGRLEILRIH 436
I +P+A R + ++
Sbjct: 292 IPLPNAHARARMFELN 307
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 89.4 bits (212), Expect = 5e-19
Identities = 41/74 (55%), Positives = 52/74 (70%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 182
G+L+YGPPGTGKT++ +AVAN T A F + G E + K GE +R F A +N+PA
Sbjct: 170 GVLLYGPPGTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPA 229
Query: 183 IIFIDELDAIAPKR 224
IIFIDE+DAIA KR
Sbjct: 230 IIFIDEIDAIATKR 243
Score = 48.0 bits (109), Expect = 1e-06
Identities = 22/42 (52%), Positives = 32/42 (76%)
Frame = +2
Query: 263 QLLTLMDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREID 388
+LLT MDG + ++V V+ ATNR +++DPAL R GR DR+I+
Sbjct: 260 ELLTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIE 301
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 88.6 bits (210), Expect = 8e-19
Identities = 39/83 (46%), Positives = 57/83 (68%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 182
G+++YG PGTGKTL+A+AVAN+T A F + G E++ K G+ +R+ F A+++SP+
Sbjct: 227 GVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPS 286
Query: 183 IIFIDELDAIAPKREKTHGEVER 251
I+FIDE+DAI KR ER
Sbjct: 287 IVFIDEIDAIGTKRYDAQSGAER 309
Score = 52.8 bits (121), Expect = 5e-08
Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +2
Query: 263 QLLTLMDGMKKSSHVI-VMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHT 439
+LL +DG S I V+ ATNR + +DPAL R GR DR+I PD + +I IHT
Sbjct: 317 ELLNQLDGFDTSQRDIKVIMATNRISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHT 376
Query: 440 KNMKLG 457
M LG
Sbjct: 377 SKMNLG 382
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 84.6 bits (200), Expect = 1e-17
Identities = 38/79 (48%), Positives = 55/79 (69%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 182
GIL+YGPPGTGKTL+ARAVA+ T F ++G E++ K GE +R+ F A +++P+
Sbjct: 181 GILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 240
Query: 183 IIFIDELDAIAPKREKTHG 239
IIF+DE+D+I R + G
Sbjct: 241 IIFMDEIDSIGSSRSDSSG 259
Score = 63.3 bits (147), Expect = 4e-11
Identities = 30/64 (46%), Positives = 44/64 (68%)
Frame = +2
Query: 263 QLLTLMDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTK 442
+LL +DG + + ++ V+ ATNR + +DPAL R GR DR+I+ P A R EILRIH++
Sbjct: 272 ELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPSAEARAEILRIHSR 331
Query: 443 NMKL 454
+M L
Sbjct: 332 SMNL 335
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 84.6 bits (200), Expect = 1e-17
Identities = 40/82 (48%), Positives = 55/82 (67%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 182
G+L++GPPGTGKT++ARAVA E+ + FF I+ + SK GESE +R F A K SP+
Sbjct: 494 GMLLFGPPGTGKTMLARAVATESRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLSPS 553
Query: 183 IIFIDELDAIAPKREKTHGEVE 248
IIF+DE+D++ R E E
Sbjct: 554 IIFVDEIDSLLSARSSDGNEHE 575
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 81.8 bits (193), Expect = 9e-17
Identities = 38/82 (46%), Positives = 55/82 (67%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 182
G+L++GPPGTGKT++ARAVA E A FF I+ + SK G+SE +R FE A + + +
Sbjct: 414 GMLLFGPPGTGKTMLARAVATEAKATFFSISASSLTSKYLGDSEKLVRALFEVAKRQTCS 473
Query: 183 IIFIDELDAIAPKREKTHGEVE 248
+IF+DE+D+I R + E E
Sbjct: 474 VIFVDEIDSILSARNDSGNEHE 495
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 81.8 bits (193), Expect = 9e-17
Identities = 39/74 (52%), Positives = 50/74 (67%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 182
G LM+GPPGTGKTL+ARA A ++ A F + P+++ G+ +R AF A + SPA
Sbjct: 221 GCLMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEKSPA 280
Query: 183 IIFIDELDAIAPKR 224
IIFIDELDAI KR
Sbjct: 281 IIFIDELDAIGTKR 294
Score = 63.3 bits (147), Expect = 4e-11
Identities = 28/64 (43%), Positives = 43/64 (67%)
Frame = +2
Query: 263 QLLTLMDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTK 442
+LL +DG V V+AATNR +++DPAL R GR DR+++ +P+ R+ ILRIH++
Sbjct: 311 ELLNQLDGFSSDDRVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSR 370
Query: 443 NMKL 454
M +
Sbjct: 371 KMAI 374
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 80.6 bits (190), Expect = 2e-16
Identities = 39/74 (52%), Positives = 47/74 (63%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 182
GI++YGPPGTGKTL ARAVAN T A F + G E++ K GE +R+ FE A
Sbjct: 215 GIMLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKAC 274
Query: 183 IIFIDELDAIAPKR 224
IIF DE+DAI R
Sbjct: 275 IIFFDEIDAIGGAR 288
Score = 72.5 bits (170), Expect = 6e-14
Identities = 31/64 (48%), Positives = 45/64 (70%)
Frame = +2
Query: 263 QLLTLMDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTK 442
+L+T +DG ++ V+ ATNRPN++D AL R GR DR+++ G+PD GR ILRIH K
Sbjct: 305 ELITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGRIDRKVEFGLPDLEGRAHILRIHAK 364
Query: 443 NMKL 454
+M +
Sbjct: 365 SMAI 368
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 80.2 bits (189), Expect = 3e-16
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +2
Query: 251 TFVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILR 430
+ VS LL LMDGM+ VI++ ATNRP+++DPALRR GRFDRE +PD R +I+
Sbjct: 390 SIVSTLLALMDGMESRGQVIIIGATNRPDAVDPALRRPGRFDREFYFPLPDRDARKKIIE 449
Query: 431 IHTKN 445
IHT+N
Sbjct: 450 IHTRN 454
Score = 78.2 bits (184), Expect = 1e-15
Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 5/86 (5%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGA-----FFFLINGPEIMSKLAGESESNLRKAFEEAD 167
G+L +GPPGTGKTL+ARA+A + F++ G + +SK GE+E LR FEEA
Sbjct: 302 GVLFHGPPGTGKTLMARALAAACSSENKKVSFYMRKGADCLSKWVGEAERQLRLLFEEAK 361
Query: 168 KNSPAIIFIDELDAIAPKREKTHGEV 245
P+IIF DE+D +AP R ++
Sbjct: 362 STQPSIIFFDEIDGLAPVRSSKQEQI 387
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 480 IAAESHGHVGADLASLCSEGSL 545
+A +S G+ GADL +LC+E +L
Sbjct: 467 LAEKSKGYGGADLRALCTEAAL 488
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 80.2 bits (189), Expect = 3e-16
Identities = 42/90 (46%), Positives = 56/90 (62%), Gaps = 9/90 (10%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGA-----FFFLINGPEIMSKLAGESESNLRKAFEEAD 167
G+L +GPPGTGKTL+AR +A FFL G + +SK GE+E LR FEEA
Sbjct: 408 GVLFHGPPGTGKTLMARVLAANCSTKNQKISFFLRKGSDCLSKWVGEAERQLRLLFEEAR 467
Query: 168 KNSPAIIFIDELDAIAP----KREKTHGEV 245
+ P+IIF DE+D +AP K+E+TH +
Sbjct: 468 RVQPSIIFFDEIDGLAPIRSSKQEQTHSSI 497
Score = 71.7 bits (168), Expect = 1e-13
Identities = 33/63 (52%), Positives = 44/63 (69%)
Frame = +2
Query: 251 TFVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILR 430
+ VS LL LMDG+ V+V+ ATNRPN +DPALRR GRFDRE +P+ R++IL
Sbjct: 496 SIVSTLLALMDGLDTRGQVVVIGATNRPNDLDPALRRPGRFDREFYFPLPNKQARMKILE 555
Query: 431 IHT 439
I++
Sbjct: 556 INS 558
Score = 30.7 bits (66), Expect = 0.23
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 102 EIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 206
E++ S L K F EA KN+P+IIFI+ ++
Sbjct: 742 ELLMDTTTSPRSLLTKIFSEARKNAPSIIFINNVE 776
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +3
Query: 465 SNLEQIAAESHGHVGADLASLCSEGSLAADFVRR 566
S L +A + G+ GADL +LC+E +L A VRR
Sbjct: 568 SYLLHLAESTSGYGGADLKALCTEAALNA--VRR 599
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 79.4 bits (187), Expect = 5e-16
Identities = 37/74 (50%), Positives = 48/74 (64%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 182
G+L+ GPPGTGKT++ARAVA E FF ++G + G +R+ F A K +P+
Sbjct: 302 GVLLTGPPGTGKTMLARAVAGEANVPFFFMSGSQFDEMYVGVGAKRVRELFAAARKQAPS 361
Query: 183 IIFIDELDAIAPKR 224
IIFIDELDAI KR
Sbjct: 362 IIFIDELDAIGQKR 375
Score = 66.9 bits (156), Expect = 3e-12
Identities = 35/71 (49%), Positives = 48/71 (67%), Gaps = 4/71 (5%)
Frame = +2
Query: 257 VSQLLTLMDGMKKS---SH-VIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEI 424
++QLL +DG K+ +H V+ + ATN P S+DPAL R GRFDR I + +PD GRL I
Sbjct: 387 LNQLLVDLDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRGRLAI 446
Query: 425 LRIHTKNMKLG 457
L HT+++ LG
Sbjct: 447 LLQHTRHVPLG 457
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 77.8 bits (183), Expect = 2e-15
Identities = 36/74 (48%), Positives = 49/74 (66%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 182
G+L+YGPPGTGKTL+ARAVA G F + I+ K GES +R+ F A ++ P
Sbjct: 168 GVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPC 227
Query: 183 IIFIDELDAIAPKR 224
+IF+DE+DAI +R
Sbjct: 228 VIFMDEIDAIGGRR 241
Score = 65.3 bits (152), Expect = 9e-12
Identities = 29/62 (46%), Positives = 43/62 (69%)
Frame = +2
Query: 263 QLLTLMDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTK 442
+LL MDG ++ ATNRP+++DPAL R GR DR+I+I +P+ GR+EIL+IH +
Sbjct: 258 ELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLE 317
Query: 443 NM 448
+
Sbjct: 318 KV 319
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 76.6 bits (180), Expect = 4e-15
Identities = 42/89 (47%), Positives = 56/89 (62%), Gaps = 9/89 (10%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGAFF-FLINGPEIMSKLAGESESNLRKAFEEADK--- 170
GIL+YGPPGTGKTLIAR + A ++NGPEI++K G+SE N+RK F +A++
Sbjct: 306 GILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGQSEENVRKLFADAEREYR 365
Query: 171 -----NSPAIIFIDELDAIAPKREKTHGE 242
+ II DELDAI KR + G+
Sbjct: 366 DRGEESGLHIIIFDELDAICKKRGSSGGD 394
Score = 66.5 bits (155), Expect = 4e-12
Identities = 31/68 (45%), Positives = 46/68 (67%)
Frame = +2
Query: 245 GKTFVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEI 424
G V+QLL MDG+ + ++++V+ TNR + ID AL R GR + ++I +PD GRL+I
Sbjct: 398 GDQVVNQLLAKMDGVDQLNNILVIGMTNRKDMIDEALLRPGRLEVHMEISLPDEHGRLQI 457
Query: 425 LRIHTKNM 448
L+IHT M
Sbjct: 458 LKIHTSRM 465
Score = 35.1 bits (77), Expect = 0.011
Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +3
Query: 6 ILMYGPPGTGKTLIARAVA-NETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 182
+L+ GP +GKT +A +A F L++ ++ +++ + FE++ K+ +
Sbjct: 588 VLLSGPIASGKTALAATIALGSEFPFVKLVSAESMVGMNENARVAHVNRVFEDSYKSPLS 647
Query: 183 IIFIDELDAI 212
+I +DE++ I
Sbjct: 648 VIVVDEIERI 657
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 76.2 bits (179), Expect = 5e-15
Identities = 34/65 (52%), Positives = 46/65 (70%)
Frame = +2
Query: 257 VSQLLTLMDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIH 436
++QLL MDG S H++V A TNRP+ +DPAL R GRFDR+I I PD GR +I ++H
Sbjct: 420 LNQLLVEMDGFTSSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGREQIFKVH 479
Query: 437 TKNMK 451
K++K
Sbjct: 480 LKHIK 484
Score = 75.8 bits (178), Expect = 6e-15
Identities = 35/74 (47%), Positives = 45/74 (60%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 182
G ++ GPPGTGKTL+A+A A E F ++G E + G S +R F A KN+P
Sbjct: 331 GAILSGPPGTGKTLLAKATAGEANVPFLSVSGSEFLEMFVGVGPSRVRDLFATARKNAPC 390
Query: 183 IIFIDELDAIAPKR 224
IIFIDE+DAI R
Sbjct: 391 IIFIDEIDAIGKAR 404
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 474 EQIAAESHGHVGADLASLCSEGSLAA 551
+++A + G GAD+ ++C+EG+L A
Sbjct: 494 KRLAVLTSGFTGADIMNVCNEGALIA 519
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 73.3 bits (172), Expect = 3e-14
Identities = 31/74 (41%), Positives = 46/74 (62%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 182
GIL++G PG GKT +A A+++ F I GPE++ K G+SE +R F A P
Sbjct: 642 GILLFGYPGCGKTYLASAISSTFPVQFISIKGPELLDKYIGKSEQGVRDLFSRAQMAKPC 701
Query: 183 IIFIDELDAIAPKR 224
++F DE D++AP+R
Sbjct: 702 VLFFDEFDSVAPRR 715
Score = 56.8 bits (131), Expect = 3e-09
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = +2
Query: 257 VSQLLTLMDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILR 430
V+Q+LT MDG + V ++AAT RP+ IDPAL R GR D+ I +P+ RLE+L+
Sbjct: 727 VNQILTQMDGAESLDGVYIVAATTRPDMIDPALLRPGRLDKLIFCDLPNEEERLEVLQ 784
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 68.5 bits (160), Expect = 9e-13
Identities = 34/93 (36%), Positives = 53/93 (56%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 182
G+L+YGPPG GKT++A+A+A ++ A F ++ + K GES + F A K P
Sbjct: 127 GLLLYGPPGCGKTMLAKALAKQSQATFINVSVGLLTDKWFGESNKLVDALFTLARKLEPT 186
Query: 183 IIFIDELDAIAPKREKTHGEVERRSFHSY*RLW 281
IIFIDE+D +R++T E + + +W
Sbjct: 187 IIFIDEIDTFLRQRQRTDHEAMAQIKAEFMSMW 219
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +2
Query: 260 SQLLTLMDGMKKS-SHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIH 436
++ +++ DG+ S V+V+ ATNRP ID A+RR R + I +P+A R +IL ++
Sbjct: 213 AEFMSMWDGLLSGQSRVLVLGATNRPADIDEAIRR--RMPKVFSIPLPNAEQRRKILELY 270
Query: 437 TKNMKL 454
K + L
Sbjct: 271 LKKVPL 276
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 39.1 bits (87), Expect = 7e-04
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +2
Query: 260 SQLLTLMDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIG 394
S LL +DG+ S I+ TN P +DPAL R GR D + +G
Sbjct: 325 SGLLNALDGVTSSDERIIFMTTNHPEKLDPALVRPGRVDVKAYLG 369
Score = 35.5 bits (78), Expect = 0.008
Identities = 24/81 (29%), Positives = 40/81 (49%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 182
G L+YGPPG+GKT A+A E ++N E G ++ L A
Sbjct: 244 GYLLYGPPGSGKTSFLYALAGELDYDICVLNLAE-----KGLTDDRLNHLLSNVPPK--A 296
Query: 183 IIFIDELDAIAPKREKTHGEV 245
++ ++++D+ RE++ GEV
Sbjct: 297 VVLLEDVDSAFQGRERS-GEV 316
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 33.9 bits (74), Expect = 0.025
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 6 ILMYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESESNLR 146
ILM GPP TGKT IA +A G+ F ++ E+ S ++E+ L+
Sbjct: 68 ILMAGPPSTGKTAIAMGMAQSLGSDTPFVTLSASEVYSLEMSKTEALLQ 116
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 31.9 bits (69), Expect = 0.099
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Frame = +3
Query: 12 MYGPPGTGKTLIARAVANETGA--FFFLINGPEIMSKLAGESES-------NLRKAFEEA 164
+ GPPG GKT + +++A+ F F + G ++++ G + + +A ++
Sbjct: 576 LVGPPGVGKTSVGKSIASALNREFFRFSVGGLTDVAEIKGHRRTYIGAMPGKIVQALKKV 635
Query: 165 DKNSPAIIFIDELDAIAPKRE 227
+P +I IDE+D + +
Sbjct: 636 QTENP-LILIDEIDKVGKSHQ 655
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 31.1 bits (67), Expect = 0.17
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 6 ILMYGPPGTGKTLIARAVANETGAFFFLIN 95
IL+ G PG GKT + A+A ETG IN
Sbjct: 1562 ILLEGSPGVGKTSLITALARETGHQLVRIN 1591
Score = 29.9 bits (64), Expect = 0.40
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 6 ILMYGPPGTGKTLIARAVANETGAFFFLINGPE 104
IL+ GP +GKT + VA +TG F IN E
Sbjct: 897 ILIQGPTSSGKTSMIEYVAKKTGHKFVRINNHE 929
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 31.1 bits (67), Expect = 0.17
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +3
Query: 3 GILMYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESES---NLRKA 152
G+L G GTGKT +A A+A E G F + G E+ S ++E+ N R+A
Sbjct: 66 GVLFAGGAGTGKTALALAIAQELGPKVPFCPMVGSEVYSSEIKKTEALMENFRRA 120
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 30.7 bits (66), Expect = 0.23
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 6 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 116
+L+ GPPG GKT A VA G +N + SK
Sbjct: 412 VLLSGPPGIGKTTAAHLVAKLEGYDVLELNASDTRSK 448
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 28.7 bits (61), Expect = 0.92
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 9 LMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 116
++ GP G+GKT +A+AV+ + G F I G ++ K
Sbjct: 18 VVIGPAGSGKTTMAKAVSEKLG--FEYIEGDDLHPK 51
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 28.7 bits (61), Expect = 0.92
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 6 ILMYGPPGTGKTLIARAVANE 68
+L YGPPGTGKT A A +
Sbjct: 59 MLFYGPPGTGKTSTILACARK 79
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 6 ILMYGPPGTGKTLIARAVANET 71
I++ G PGTGKT +A VA T
Sbjct: 11 IIICGTPGTGKTTLAEQVAETT 32
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 9 LMYGPPGTGKTLIARAVAN 65
L GP GTGKTL+ +A+A+
Sbjct: 618 LFCGPSGTGKTLLTKALAS 636
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 9 LMYGPPGTGKTLIARAV 59
L+ GPPGTGKT+ + +V
Sbjct: 411 LIQGPPGTGKTVTSASV 427
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 6 ILMYGPPGTGKTLIARAVANE 68
+L YG PGTGKT A++ E
Sbjct: 55 MLFYGSPGTGKTSTILALSRE 75
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 18 GPPGTGKTLIARAVANETGAFFFLIN 95
GP GTGKT +AV+ G F+ N
Sbjct: 1890 GPAGTGKTETVKAVSAYLGKNVFVFN 1915
>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -2
Query: 727 RMSVHVTLGTSTTVSRNADGDDXVIAYRKVIHGDSQRIENLC 602
R H+ L S + S D ++ + + D++R+ENLC
Sbjct: 280 RNVTHILLDPSCSGSGIVSRQDYLLGNEQDVTEDTERLENLC 321
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +3
Query: 9 LMYGPPGTGKT 41
L++GPPGTGKT
Sbjct: 229 LIHGPPGTGKT 239
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 25.8 bits (54), Expect = 6.5
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Frame = +3
Query: 6 ILMYGPPGTGKTLIARAVANETGAFFFLINGP-EIMSKLAGESESNLRKAFEEADKNSPA 182
+ YG GTGKT + NE G +N E++ + + +R ++ E N
Sbjct: 214 VFAYGMTGTGKTYSMQGTENEPGIIPLAMNDLFEMVENNSDDDTFQIRISYLEI-YNERI 272
Query: 183 IIFIDELDAIAPKREKTHGEV 245
I D RE GEV
Sbjct: 273 RDLIGNSDEEPRIRENASGEV 293
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 25.4 bits (53), Expect = 8.6
Identities = 7/23 (30%), Positives = 16/23 (69%)
Frame = -1
Query: 242 FTVGFLSLWCNSIEFINEDNSRR 174
+TV ++LW +++++ +D RR
Sbjct: 633 YTVKIIALWGRAVKYLKQDGKRR 655
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,193
Number of Sequences: 5004
Number of extensions: 50419
Number of successful extensions: 304
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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