Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0591
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    29   0.55 
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    28   1.7  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    28   1.7  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    26   5.2  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   6.8  

>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -2

Query: 755 MINKWIYLNHNFERYYKRLTFFMA*MGGELTAHLVLNGYWSPIDIYNVNAP 603
           M++K   L HNF+ +Y++L+        + +  L LN +WS  ++Y  N+P
Sbjct: 141 MLHKSFNL-HNFQSFYQKLSL-------DSSLILALNNFWSFFNLYLTNSP 183


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 672 RAHSPPGVKWLLEPHRHLQC-KCANDL 595
           R   PPG  + + PH ++ C KC N+L
Sbjct: 128 RVSPPPGFCYDVHPHNNIACAKCGNEL 154


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 690 YGLDGWRAHSPPGVKWLLEP 631
           YG DG   H P  V WLL P
Sbjct: 231 YGTDGGPLHDPNTVMWLLRP 250


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 7   SYSIERRV*PDQKENSAKYVRNLLRFDTPISIPNHALDSDQYFATKNFTH 156
           SY   + V  D K     ++ +  R  TP+    ++ ++  Y  TKNFTH
Sbjct: 7   SYREAKDVSLDSKGLENSFLSSPNREKTPLFFEGNSNETSGYDQTKNFTH 56


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 687 GLDGWRAHSPPGVKWLLEPHRH 622
           G  G R  +  G K ++EPHRH
Sbjct: 59  GSSGGRGGAKGGAKVIIEPHRH 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,194,550
Number of Sequences: 5004
Number of extensions: 64315
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)