Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0591
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80028-9|AAN73867.1|  372|Caenorhabditis elegans Serpentine rece...    31   1.2  
AL034393-23|CAH19089.1|  274|Caenorhabditis elegans Hypothetical...    29   4.8  
U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        28   6.4  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    28   6.4  

>U80028-9|AAN73867.1|  372|Caenorhabditis elegans Serpentine
           receptor, class w protein117 protein.
          Length = 372

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = -3

Query: 448 NGFSQTLFSFDKNRISDIIPMYVRNMLITVILPNKLSV*SRQTKAISIF---HFPLRTIL 278
           NGF    FS   + +SDIIP  +  ++  +++ +      ++   +S+    +F  +T L
Sbjct: 214 NGFIAKYFSLFNSFVSDIIPCLLLPIVTVLLVMDLWKTAKKRANIVSVSNKNNFRSKTGL 273

Query: 277 VFFLLIRFYL 248
           VF + I F+L
Sbjct: 274 VFCVTIMFFL 283


>AL034393-23|CAH19089.1|  274|Caenorhabditis elegans Hypothetical
           protein Y18D10A.26 protein.
          Length = 274

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = +3

Query: 129 VFCYKKLYTRFLN*FTKLSLA*YLKNRSFVHQTWRG*AESR*NLISKKNTRIVRSGKWKI 308
           +F Y KL T  L  F K       + R+   + W+    SR +   K N +I RS  +KI
Sbjct: 210 IFFYVKLCTMKLKNFLKTE---NFRKRTHFGKLWKHVETSRHSKHKKTNNKISRSVIFKI 266

Query: 309 DMA 317
           D+A
Sbjct: 267 DLA 269


>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = -2

Query: 731 NHNFERYYKRLTFFMA*MGGELTAHLVLNGYWSPIDIYNVNAPTTLR 591
           + N+ R + +    M       TA ++   YW   D Y +N P  +R
Sbjct: 535 SENYGRLFNQYLEHMNKEKANFTARVITPEYWPTYDTYEINIPKEMR 581


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = -2

Query: 731 NHNFERYYKRLTFFMA*MGGELTAHLVLNGYWSPIDIYNVNAPTTLR 591
           + N+ R + +    M       TA ++   YW   D Y +N P  +R
Sbjct: 572 SENYGRLFNQYLEHMNKEKANFTARVITPEYWPTYDTYEINIPKEMR 618


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,426,269
Number of Sequences: 27780
Number of extensions: 354477
Number of successful extensions: 645
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)