Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0591
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   7.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   7.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.2  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 37  DQKENSAKYVRNLLRFDTPISIPNHALDSDQYFATKNFTHV 159
           DQ  +S  Y+  +  F + ++IP+  +D DQ  + ++ T V
Sbjct: 372 DQDYSSQNYL-TVHSFPSTLNIPSVKIDEDQKCSIESITSV 411


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -2

Query: 755 MINKWIYLNHNFERYYKR 702
           +I+KW YL+++F+   +R
Sbjct: 38  VIHKWKYLDYDFDNDERR 55


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 23  GECDQTKKRIVQNTYVTF*DLIRPFPFQTTR 115
           G C + ++R+V++ +  +  LIRP    T +
Sbjct: 21  GLCSEDEERLVRDLFRGYNKLIRPVQNMTEK 51


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 342 NLLGNITVINILRTYIGIM 398
           N+L +I  + +LRT  G+M
Sbjct: 265 NILSHINTVYVLRTKKGVM 283


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 342 NLLGNITVINILRTYIGIM 398
           N+L +I  + +LRT  G+M
Sbjct: 265 NILSHINTVYVLRTKKGVM 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,464
Number of Sequences: 438
Number of extensions: 4710
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)