Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0590
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    27   2.0  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   2.7  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   2.7  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    27   3.6  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    26   4.7  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    26   6.2  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    25   8.2  

>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +1

Query: 385 KKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEVD-QKWFGNHLQNAQL 549
           +K+P      RK+   K PT  +  K  A   K  K    VD +K  G  L N Q+
Sbjct: 157 QKNPEMPPKRRKTEENKKPTKSALPKKEASKKKNPKVKGPVDVEKQCGVLLPNGQM 212


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/56 (23%), Positives = 28/56 (50%)
 Frame = +1

Query: 364 VSPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEVDQKWFGNH 531
           VSP   AKK  ++   + K P ++  + + +R   ++ P+ +K +   +  + G H
Sbjct: 475 VSPKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSKVPENLKESHVNETPYRGLH 530


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 406 TPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEVDQKWFGN 528
           T  ++ PSR      S +KS ARA  E +P+A+ ++ + GN
Sbjct: 200 TCEKRKPSRSPSPMLSKKKSVARA-SENEPSAKQNKSFSGN 239


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 552 KSNLSIKLEDLTANFESLRNARNRRMDYTLRDVTSTNSQIIIESVNGV 695
           K+ L+  L+D  A+ E L NAR R    TLR      S     S++ +
Sbjct: 13  KAILATPLDDDEADKEKLANARGRASSATLRHYNRRRSSYSASSLSSL 60


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 391 SPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVK 492
           SP   TPT+ SP  K+P +  A  S +      K
Sbjct: 14  SPAMETPTKASPDSKSPNSVGAIPSSSPLASSTK 47


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +1

Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEVDQKWFGNHL 534
           SP H   +SP+ R P   SPSR    +     S      + KP     +K  GN++
Sbjct: 73  SPHHGPVRSPSSRKPLPASPSRTRDHSLRVPVSGHSYSADEKPRER--RKVIGNYV 126


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = +3

Query: 597 ESLRNARNRRMDYTLRDVTSTNSQIIIESVNGVDLXKLST 716
           +S+++  N  MD+ +  +  TN  ++    +G+D  +++T
Sbjct: 299 DSIKDVWNMSMDFLIDKLGQTNGPLVWNLCHGIDNTEITT 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,668
Number of Sequences: 5004
Number of extensions: 54033
Number of successful extensions: 188
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)