Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0590
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1107 - 24024387-24024497,24025799-24026410 32 0.53
03_04_0029 - 16610182-16611753 31 0.92
12_02_0239 - 16125105-16126025,16126966-16127415 29 2.8
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 29 2.8
05_05_0392 + 24629528-24630442 29 3.7
04_04_0293 - 24189344-24189350,24189804-24190026,24190411-241905... 29 3.7
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 29 3.7
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 29 3.7
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 29 4.9
05_06_0122 - 25775652-25775936,25776027-25776103,25776177-257762... 28 6.5
12_02_0458 - 19244972-19245073,19245299-19245673,19245772-192458... 28 8.6
12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718 28 8.6
11_02_0044 - 7695794-7695918,7696353-7696542,7696633-7696759,770... 28 8.6
01_06_0922 - 33022709-33023545 28 8.6
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 31.9 bits (69), Expect = 0.53
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPT 498
+P PA +P + PT +P++ PT + K+PA APK K T
Sbjct: 65 APTTPATPAPAE-APTTPAPTKAPPT--KSTKAPAPAPKAAKAT 105
>03_04_0029 - 16610182-16611753
Length = 523
Score = 31.1 bits (67), Expect = 0.92
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPA-RAP 480
S A PA SP+ +P SPS ++ RKSPA RAP
Sbjct: 70 STAAPAAASPSIASPAASSPSDVPSSSSKKRKSPAHRAP 108
>12_02_0239 - 16125105-16126025,16126966-16127415
Length = 456
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +1
Query: 463 SPARA-PKEVKPTAEVDQKWFGNHLQ 537
+PARA P++ KP +++D WF ++Q
Sbjct: 17 APARATPRDTKPLSDLDNDWFLRYIQ 42
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = +1
Query: 370 PAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSP----ARAPKEVKPTAEVDQK 516
P P +KS P P + +P N + P A+ PK+ P E+D K
Sbjct: 103 PPPPPQKSAKVSPPPAAKPPKLSPPNLAKATKPSRLAAKPPKKAAPGPELDPK 155
>05_05_0392 + 24629528-24630442
Length = 304
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARA 477
SP P ++ P +R PTR+SPS T R++ A A
Sbjct: 174 SPPPPPRREPGER-PTRRSPSPATKRPPDQRRTAASA 209
>04_04_0293 -
24189344-24189350,24189804-24190026,24190411-24190529,
24191331-24191578
Length = 198
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = +1
Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTA 501
SPA PA K+P P K+ + P ARK+PA A K TA
Sbjct: 4 SPAAPAPKAPAAAGPAPKATAPAGP----ARKAPAAAGPAPKATA 44
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = +1
Query: 370 PAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEV 507
P+ SP PT+ P PT AR PA A E KP V
Sbjct: 58 PSPSPSPSPPAGKPTKPHPESTPPTKTPARSKPAAAAAE-KPRPSV 102
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +1
Query: 367 SPAHPAKK--SPN-QRTPTRKSPSRKTPTNFSARK-SPARAPKEVKPTAEVDQKWFGNHL 534
SP+ PA K P+ + TP K+P+R P +A K P+ AP+ + W +
Sbjct: 63 SPSPPAGKPTKPHPESTPPTKTPARSKPAAAAAEKPRPSVAPESTNGGGGGEHWWLVGSV 122
Query: 535 QNAQL 549
+ A L
Sbjct: 123 EMAGL 127
>01_06_0213 + 27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 483 RGKAYSRGRPEVVRQSPSKRPALKSNLSIKLEDLTANFESLRNAR 617
RG+ RGR R S++P+ SI E+L +F L NA+
Sbjct: 1393 RGRTRGRGRGRGRRTVRSRQPSEGKGRSIPKENLLGSFSMLSNAK 1437
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 370 PAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTA 501
PA P SP+ P R SPS+ P ++ K P + P A
Sbjct: 197 PAEPPVPSPSPEHPPRHSPSK--PPAYAPAKPPTALRPAIPPAA 238
>05_06_0122 -
25775652-25775936,25776027-25776103,25776177-25776281,
25776353-25776542,25776617-25776804,25776882-25777191
Length = 384
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKP 495
S A P++K P T SP K + S +SP + PK +P
Sbjct: 56 SDAGPSQKVPEVEAQTN-SPLGKDADSESETRSPVKTPKSTRP 97
>12_02_0458 -
19244972-19245073,19245299-19245673,19245772-19245878,
19245971-19246014,19246110-19246254,19246348-19246486,
19246855-19247091
Length = 382
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = -3
Query: 380 GCAGDTFLARGEFFRLLAGERDGETLFFVCTGLVSRTLNLILHYE*TYCNINRVSLICSK 201
G G+T + FF L + LF + G+ +LI Y + ++ ++ICS
Sbjct: 61 GQVGETRPSMPSFFTQLTQDNWPSVLFAMAGGIALSIGHLISQYAWAFVGLSVTNIICSS 120
Query: 200 INI--RTTRNEYI 168
+ + TT N ++
Sbjct: 121 LAVVLGTTMNYFL 133
>12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718
Length = 490
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 463 SPARA-PKEVKPTAEVDQKWFGNHLQ 537
+PARA P+E KP +++D W +LQ
Sbjct: 17 APARATPRETKPLSDLDDHWDLRYLQ 42
>11_02_0044 -
7695794-7695918,7696353-7696542,7696633-7696759,
7701596-7701824,7702973-7703005,7703191-7703281
Length = 264
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 382 AKKSPNQRTPTRKSPSRKTPTNFSARKSP-ARAPKEVKPTAEVD 510
AKK ++TP S K+ T S + P +R PK P E D
Sbjct: 139 AKKQSKEKTPKTSGKSNKSGTKPSRQPEPNSRGPKMPPPKDEDD 182
>01_06_0922 - 33022709-33023545
Length = 278
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPT 498
SP+ AK++P QR +PS + R SP R +E P+
Sbjct: 182 SPSPAAKRTPEQRRAASPAPSLQRKPPVPVRPSPRRV-QEAPPS 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,612,356
Number of Sequences: 37544
Number of extensions: 322232
Number of successful extensions: 965
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -