BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0590 (721 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 33 0.16 U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co... 31 0.63 Z54342-15|CAK55172.1| 465|Caenorhabditis elegans Hypothetical p... 31 0.83 U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr... 31 1.1 U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr... 31 1.1 AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical ... 30 1.4 Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical pr... 30 1.9 Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical pr... 30 1.9 Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 29 4.4 Z50756-4|CAA90639.1| 482|Caenorhabditis elegans Hypothetical pr... 29 4.4 Z50741-5|CAA90612.1| 482|Caenorhabditis elegans Hypothetical pr... 29 4.4 AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ... 29 4.4 AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ... 29 4.4 AC024206-5|AAF36051.2| 474|Caenorhabditis elegans Hypothetical ... 29 4.4 Z81525-1|CAB04256.1| 897|Caenorhabditis elegans Hypothetical pr... 28 7.7 U19615-1|AAB51351.1| 897|Caenorhabditis elegans Nucampholin pro... 28 7.7 AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 28 7.7 AF077542-6|AAC26298.1| 108|Caenorhabditis elegans Hypothetical ... 28 7.7 AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ... 28 7.7 AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical ... 28 7.7 >AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical protein T08D2.8 protein. Length = 388 Score = 33.5 bits (73), Expect = 0.16 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = +1 Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPA-RAPKEVKPTAEVDQKWF 522 S P + P PTR++PS K P R++P+ +AP V P A V K F Sbjct: 234 SAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRAPSPKAP--VAPVAPVKPKPF 284 >U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore complex protein protein7 protein. Length = 1217 Score = 31.5 bits (68), Expect = 0.63 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Frame = +3 Query: 522 RQSPSKRPALKSNLSIKLEDLTANFE-SLRNARNRRMDYTLRDVTSTNSQIIIESVNGVD 698 + SPS PALK+ LS+ E A+ E S+ ++N R+ LR ++ T + NG++ Sbjct: 42 KSSPSASPALKNILSVDNEAKIASDETSVNTSQNHRIGSRLRYLSPTALDRRTSASNGLE 101 Query: 699 L 701 + Sbjct: 102 I 102 >Z54342-15|CAK55172.1| 465|Caenorhabditis elegans Hypothetical protein C08H9.4b protein. Length = 465 Score = 31.1 bits (67), Expect = 0.83 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = +3 Query: 552 KSNLSIKLEDLTANFESLRNARNRRMDYTLRDVTSTNSQI---IIESVNGVD 698 K+N + +++L F L+N NR+ D+ + V S+N + ++E +N VD Sbjct: 235 KNNYLMFIQELRYAFTELQNKLNRKEDFVISLVASSNLNLLFNLVEFLNSVD 286 >U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical protein F54D11.2 protein. Length = 1145 Score = 30.7 bits (66), Expect = 1.1 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +1 Query: 370 PAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPK 483 P P KK + PT SP + TPT+ ++ AR K Sbjct: 214 PLVPEKKPKIEDAPTTSSPKKSTPTSAPPTRASARVSK 251 >U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein C27F2.8 protein. Length = 1715 Score = 30.7 bits (66), Expect = 1.1 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +1 Query: 394 PNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTA 501 P Q TP++ KTP+ + + PA +P + PT+ Sbjct: 1360 PKQPTPSKARTPSKTPSQSNRAQHPASSPAPIAPTS 1395 >AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical protein F54A3.1 protein. Length = 425 Score = 30.3 bits (65), Expect = 1.4 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = +1 Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPA-RAPKEVKPTAEVDQKWF 522 S P + P PTR++PS K P R++P+ +AP V A V K F Sbjct: 238 SAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRAPSPKAP--VASVAPVKPKPF 288 >Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical protein F40F11.2b protein. Length = 1607 Score = 29.9 bits (64), Expect = 1.9 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = +1 Query: 385 KKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEVDQK 516 K SP + TPT+ K+P K+P + P ++ P+ +K Sbjct: 1171 KASPAETTPTKLQLKEKSPAKTPVFKTPLQTPIKMTPSPSESRK 1214 >Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical protein F40F11.2a protein. Length = 1593 Score = 29.9 bits (64), Expect = 1.9 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = +1 Query: 385 KKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEVDQK 516 K SP + TPT+ K+P K+P + P ++ P+ +K Sbjct: 1157 KASPAETTPTKLQLKEKSPAKTPVFKTPLQTPIKMTPSPSESRK 1200 >Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical protein T10B10.1 protein. Length = 428 Score = 28.7 bits (61), Expect = 4.4 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%) Frame = +1 Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPT----NFSARKSPARAPKEVKPTAEVDQ 513 +P PA SP+ +P+ SPS +P+ ++ + PA V P A+ +Q Sbjct: 356 APQEPAHPSPSYPSPSYPSPSYPSPSYPSPSYPSPSYPAEPAYSVPPPAKPEQ 408 >Z50756-4|CAA90639.1| 482|Caenorhabditis elegans Hypothetical protein T08D10.1 protein. Length = 482 Score = 28.7 bits (61), Expect = 4.4 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = +1 Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSP 468 S H A S +Q TPT+ +PS+ TP + S ++P Sbjct: 88 SQTHQA--SVSQTTPTQTTPSQYTPASVSTARAP 119 >Z50741-5|CAA90612.1| 482|Caenorhabditis elegans Hypothetical protein T08D10.1 protein. Length = 482 Score = 28.7 bits (61), Expect = 4.4 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = +1 Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSP 468 S H A S +Q TPT+ +PS+ TP + S ++P Sbjct: 88 SQTHQA--SVSQTTPTQTTPSQYTPASVSTARAP 119 >AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical protein Y38E10A.6b protein. Length = 1345 Score = 28.7 bits (61), Expect = 4.4 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = +1 Query: 406 TPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEVD 510 +P++K S +T T+F +++P APK V T E D Sbjct: 1217 SPSQKHKSTQT-TDFGPKEAPKEAPKAVVETLEPD 1250 >AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical protein Y38E10A.6a protein. Length = 1343 Score = 28.7 bits (61), Expect = 4.4 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = +1 Query: 406 TPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEVD 510 +P++K S +T T+F +++P APK V T E D Sbjct: 1215 SPSQKHKSTQT-TDFGPKEAPKEAPKAVVETLEPD 1248 >AC024206-5|AAF36051.2| 474|Caenorhabditis elegans Hypothetical protein Y74C9A.5 protein. Length = 474 Score = 28.7 bits (61), Expect = 4.4 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = -3 Query: 347 EFFRLLAGERDGETLFFVCTGLVSRTLNLILHYE*TYCNINRVSL 213 EF R L G +D E + V ++R + HY CN N + L Sbjct: 420 EFTRALPGFKDSEKIHVVMMVAMARFQASMFHYTRAVCNYNAMCL 464 >Z81525-1|CAB04256.1| 897|Caenorhabditis elegans Hypothetical protein F33A8.1 protein. Length = 897 Score = 27.9 bits (59), Expect = 7.7 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +1 Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPK 483 SPA K + KSP R S+ +SP+R+P+ Sbjct: 88 SPAPKRSKETRESESPEKSPVRSRSPRRSSARSPSRSPR 126 >U19615-1|AAB51351.1| 897|Caenorhabditis elegans Nucampholin protein. Length = 897 Score = 27.9 bits (59), Expect = 7.7 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +1 Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPK 483 SPA K + KSP R S+ +SP+R+P+ Sbjct: 88 SPAPKRSKETRESESPEKSPVRSRSPRRSSARSPSRSPR 126 >AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical protein Y106G6D.7 protein. Length = 948 Score = 27.9 bits (59), Expect = 7.7 Identities = 14/44 (31%), Positives = 20/44 (45%) Frame = +1 Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPT 498 SP ++SP +R +S SR P +SP R + PT Sbjct: 561 SPIRSPRRSPLRRDNRDRSRSRSPPRRRRRSRSPRRREEHTDPT 604 >AF077542-6|AAC26298.1| 108|Caenorhabditis elegans Hypothetical protein Y57G7A.3a protein. Length = 108 Score = 27.9 bits (59), Expect = 7.7 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +1 Query: 376 HPAKKSPNQRTPTRKSPSRKTPTNFSARKS 465 +P KKS Q PT ++P KTP S ++ Sbjct: 52 NPIKKSSTQTCPTAQTPPAKTPIERSRHEA 81 >AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical protein Y20F4.4 protein. Length = 1319 Score = 27.9 bits (59), Expect = 7.7 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +3 Query: 489 KAYSRGRPEVVRQSPSKRPALKSNLSIKLEDLTANFESL 605 ++ SRGR E R+SP K P+ ++ T N E + Sbjct: 435 RSQSRGRSEATRRSPPKGPSAPPAYTLPFGGSTPNHEPM 473 >AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical protein Y46C8AL.2 protein. Length = 456 Score = 27.9 bits (59), Expect = 7.7 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = +1 Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTA 501 +P P + + TPT + + TPT S KS P +K ++ Sbjct: 409 TPTTPTTPTTMKSTPTTPTTMKSTPTTPSTMKSSPTTPTTMKTSS 453 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,920,950 Number of Sequences: 27780 Number of extensions: 300213 Number of successful extensions: 1221 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 978 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1183 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1687292480 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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