Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0590
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC199170-9|ABO33267.1|  388|Caenorhabditis elegans Hypothetical ...    33   0.16 
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    31   0.63 
Z54342-15|CAK55172.1|  465|Caenorhabditis elegans Hypothetical p...    31   0.83 
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z50756-4|CAA90639.1|  482|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z50741-5|CAA90612.1|  482|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ...    29   4.4  
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ...    29   4.4  
AC024206-5|AAF36051.2|  474|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin pro...    28   7.7  
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    28   7.7  
AF077542-6|AAC26298.1|  108|Caenorhabditis elegans Hypothetical ...    28   7.7  
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ...    28   7.7  
AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AC199170-9|ABO33267.1|  388|Caenorhabditis elegans Hypothetical
           protein T08D2.8 protein.
          Length = 388

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPA-RAPKEVKPTAEVDQKWF 522
           S   P +  P    PTR++PS K P     R++P+ +AP  V P A V  K F
Sbjct: 234 SAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRAPSPKAP--VAPVAPVKPKPF 284


>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
           complex protein protein7 protein.
          Length = 1217

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +3

Query: 522 RQSPSKRPALKSNLSIKLEDLTANFE-SLRNARNRRMDYTLRDVTSTNSQIIIESVNGVD 698
           + SPS  PALK+ LS+  E   A+ E S+  ++N R+   LR ++ T       + NG++
Sbjct: 42  KSSPSASPALKNILSVDNEAKIASDETSVNTSQNHRIGSRLRYLSPTALDRRTSASNGLE 101

Query: 699 L 701
           +
Sbjct: 102 I 102


>Z54342-15|CAK55172.1|  465|Caenorhabditis elegans Hypothetical
           protein C08H9.4b protein.
          Length = 465

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = +3

Query: 552 KSNLSIKLEDLTANFESLRNARNRRMDYTLRDVTSTNSQI---IIESVNGVD 698
           K+N  + +++L   F  L+N  NR+ D+ +  V S+N  +   ++E +N VD
Sbjct: 235 KNNYLMFIQELRYAFTELQNKLNRKEDFVISLVASSNLNLLFNLVEFLNSVD 286


>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
           protein F54D11.2 protein.
          Length = 1145

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 370 PAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPK 483
           P  P KK   +  PT  SP + TPT+    ++ AR  K
Sbjct: 214 PLVPEKKPKIEDAPTTSSPKKSTPTSAPPTRASARVSK 251


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein
            C27F2.8 protein.
          Length = 1715

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 394  PNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTA 501
            P Q TP++     KTP+  +  + PA +P  + PT+
Sbjct: 1360 PKQPTPSKARTPSKTPSQSNRAQHPASSPAPIAPTS 1395


>AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical
           protein F54A3.1 protein.
          Length = 425

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPA-RAPKEVKPTAEVDQKWF 522
           S   P +  P    PTR++PS K P     R++P+ +AP  V   A V  K F
Sbjct: 238 SAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRAPSPKAP--VASVAPVKPKPF 288


>Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical protein
            F40F11.2b protein.
          Length = 1607

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 385  KKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEVDQK 516
            K SP + TPT+     K+P      K+P + P ++ P+    +K
Sbjct: 1171 KASPAETTPTKLQLKEKSPAKTPVFKTPLQTPIKMTPSPSESRK 1214


>Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical protein
            F40F11.2a protein.
          Length = 1593

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 385  KKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEVDQK 516
            K SP + TPT+     K+P      K+P + P ++ P+    +K
Sbjct: 1157 KASPAETTPTKLQLKEKSPAKTPVFKTPLQTPIKMTPSPSESRK 1200


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +1

Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPT----NFSARKSPARAPKEVKPTAEVDQ 513
           +P  PA  SP+  +P+  SPS  +P+    ++ +   PA     V P A+ +Q
Sbjct: 356 APQEPAHPSPSYPSPSYPSPSYPSPSYPSPSYPSPSYPAEPAYSVPPPAKPEQ 408


>Z50756-4|CAA90639.1|  482|Caenorhabditis elegans Hypothetical
           protein T08D10.1 protein.
          Length = 482

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSP 468
           S  H A  S +Q TPT+ +PS+ TP + S  ++P
Sbjct: 88  SQTHQA--SVSQTTPTQTTPSQYTPASVSTARAP 119


>Z50741-5|CAA90612.1|  482|Caenorhabditis elegans Hypothetical
           protein T08D10.1 protein.
          Length = 482

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSP 468
           S  H A  S +Q TPT+ +PS+ TP + S  ++P
Sbjct: 88  SQTHQA--SVSQTTPTQTTPSQYTPASVSTARAP 119


>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
            protein Y38E10A.6b protein.
          Length = 1345

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 406  TPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEVD 510
            +P++K  S +T T+F  +++P  APK V  T E D
Sbjct: 1217 SPSQKHKSTQT-TDFGPKEAPKEAPKAVVETLEPD 1250


>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
            protein Y38E10A.6a protein.
          Length = 1343

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 406  TPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEVD 510
            +P++K  S +T T+F  +++P  APK V  T E D
Sbjct: 1215 SPSQKHKSTQT-TDFGPKEAPKEAPKAVVETLEPD 1248


>AC024206-5|AAF36051.2|  474|Caenorhabditis elegans Hypothetical
           protein Y74C9A.5 protein.
          Length = 474

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 347 EFFRLLAGERDGETLFFVCTGLVSRTLNLILHYE*TYCNINRVSL 213
           EF R L G +D E +  V    ++R    + HY    CN N + L
Sbjct: 420 EFTRALPGFKDSEKIHVVMMVAMARFQASMFHYTRAVCNYNAMCL 464


>Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical
           protein F33A8.1 protein.
          Length = 897

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPK 483
           SPA    K   +     KSP R      S+ +SP+R+P+
Sbjct: 88  SPAPKRSKETRESESPEKSPVRSRSPRRSSARSPSRSPR 126


>U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin
           protein.
          Length = 897

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPK 483
           SPA    K   +     KSP R      S+ +SP+R+P+
Sbjct: 88  SPAPKRSKETRESESPEKSPVRSRSPRRSSARSPSRSPR 126


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPT 498
           SP    ++SP +R    +S SR  P      +SP R  +   PT
Sbjct: 561 SPIRSPRRSPLRRDNRDRSRSRSPPRRRRRSRSPRRREEHTDPT 604


>AF077542-6|AAC26298.1|  108|Caenorhabditis elegans Hypothetical
           protein Y57G7A.3a protein.
          Length = 108

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 376 HPAKKSPNQRTPTRKSPSRKTPTNFSARKS 465
           +P KKS  Q  PT ++P  KTP   S  ++
Sbjct: 52  NPIKKSSTQTCPTAQTPPAKTPIERSRHEA 81


>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
           protein Y20F4.4 protein.
          Length = 1319

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 489 KAYSRGRPEVVRQSPSKRPALKSNLSIKLEDLTANFESL 605
           ++ SRGR E  R+SP K P+     ++     T N E +
Sbjct: 435 RSQSRGRSEATRRSPPKGPSAPPAYTLPFGGSTPNHEPM 473


>AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical
           protein Y46C8AL.2 protein.
          Length = 456

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTA 501
           +P  P   +  + TPT  +  + TPT  S  KS    P  +K ++
Sbjct: 409 TPTTPTTPTTMKSTPTTPTTMKSTPTTPSTMKSSPTTPTTMKTSS 453


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,920,950
Number of Sequences: 27780
Number of extensions: 300213
Number of successful extensions: 1221
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)