Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0590
(721 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g06230.2 68414.m00659 DNA-binding bromodomain-containing prot... 31 0.58
At1g06230.1 68414.m00658 DNA-binding bromodomain-containing prot... 31 0.58
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 31 0.77
At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family... 30 1.3
At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17) identic... 30 1.3
At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17) identic... 30 1.3
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 30 1.8
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 30 1.8
At3g28790.1 68416.m03593 expressed protein 29 3.1
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 29 4.1
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 29 4.1
At5g60740.1 68418.m07621 ABC transporter family protein similar ... 28 5.4
At5g55300.1 68418.m06891 DNA topoisomerase I identical to Swiss-... 28 7.2
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 28 7.2
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 28 7.2
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 27 9.5
>At1g06230.2 68414.m00659 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 31.5 bits (68), Expect = 0.58
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = +1
Query: 403 RTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEVDQKWFGNHLQN 540
RTPT +PS +TP + +K A P + T E QK G HLQN
Sbjct: 580 RTPTSATPSGRTP---ALKKPKANEPNKRDMTYEEKQKLSG-HLQN 621
>At1g06230.1 68414.m00658 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 31.5 bits (68), Expect = 0.58
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = +1
Query: 403 RTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEVDQKWFGNHLQN 540
RTPT +PS +TP + +K A P + T E QK G HLQN
Sbjct: 580 RTPTSATPSGRTP---ALKKPKANEPNKRDMTYEEKQKLSG-HLQN 621
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 31.1 bits (67), Expect = 0.77
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 364 VSPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAP 480
+SP+H SP +P+ KSPS P + S SPA P
Sbjct: 194 LSPSHATSHSPATPSPSPKSPS---PVSHSPSHSPAHTP 229
>At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family
protein identical to gi|4775268|emb|CAB42531
Length = 150
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPK 483
+P+ KKSP+ K+P+ T + K+PA APK
Sbjct: 23 APSASPKKSPSPTAAPTKAPTATTKAPSAPTKAPAAAPK 61
>At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17) identical
to gi_11935086_gb_AAG41963
Length = 162
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 367 SPAHPAKKSPNQRTPTRK--SPSRKTPTNFSA-RKSPARAPKEVKPT 498
+P H SP++ PT SP+ TP + A K+P AP E P+
Sbjct: 27 APIHSPSTSPHKPKPTSPAISPAAPTPESTEAPAKTPVEAPVEAPPS 73
>At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17) identical
to gi_11935086_gb_AAG41963
Length = 185
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 367 SPAHPAKKSPNQRTPTRK--SPSRKTPTNFSA-RKSPARAPKEVKPT 498
+P H SP++ PT SP+ TP + A K+P AP E P+
Sbjct: 27 APIHSPSTSPHKPKPTSPAISPAAPTPESTEAPAKTPVEAPVEAPPS 73
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 373 AHPAKKSPNQRTPTRKSPSRK-TPTNFSARKSPARAPKEVKPTAEVDQK 516
A PA++SP +P + SP+R+ +P S +SP+ + + P + QK
Sbjct: 214 ASPARRSPRSSSPQKTSPAREVSPDKRSNERSPS-PRRSLSPRSPALQK 261
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 373 AHPAKKSPNQRTPTRKSPSRK-TPTNFSARKSPARAPKEVKPTAEVDQK 516
A PA++SP +P + SP+R+ +P S +SP+ + + P + QK
Sbjct: 214 ASPARRSPRSSSPQKTSPAREVSPDKRSNERSPS-PRRSLSPRSPALQK 261
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPT-NFSARKSPARAPKEVKPTAEVDQK 516
+P+ P +P TPT +P+ TPT + A +PA K + K
Sbjct: 282 TPSTPTPSTPTPSTPTPSTPTPSTPTPSTPAPSTPAAGKTSEKGSESASMK 332
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSP 468
SP+ P+ SP TPT +PS TPT + +P
Sbjct: 66 SPSTPSHPSPPSHTPTPSTPSH-TPTPHTPSHTP 98
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSP 468
SP+ P+ SP TPT +PS TPT + +P
Sbjct: 66 SPSTPSHPSPPSHTPTPSTPSH-TPTPHTPSHTP 98
>At5g60740.1 68418.m07621 ABC transporter family protein similar to
ATP-binding cassette, sub-family G, member 2
(Placenta-specific ATP- binding cassette transporter)
(Breast cancer resistance protein) SP:Q9UNQ0 from [Homo
sapiens]
Length = 1061
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 282 KSGADKEKSFAVSFSRQKSKKLPSSKEGISCA 377
K + ++SF+ +FSR+KS K P G+S A
Sbjct: 354 KHATELQQSFSRTFSRRKSMKQPDLMRGLSQA 385
>At5g55300.1 68418.m06891 DNA topoisomerase I identical to
Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
thaliana]
Length = 916
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 364 VSPAHPAKKSPNQRTPTRK-SPSRKTPTNFSARKSPARAP 480
VSP SPN TP+ K S + + + S++ SPA++P
Sbjct: 54 VSPMRSPVTSPNGTTPSNKTSIVKSSMPSSSSKASPAKSP 93
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +1
Query: 370 PAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPK 483
P P K P+ + PT+ P K P K P PK
Sbjct: 92 PKPPTVKPPHPKPPTKPHPHPKPPIVKPPTKPPPSTPK 129
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = +1
Query: 367 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEV 507
SP P P TP+ SP+ PT+ P +P PT V
Sbjct: 146 SPTPPVSPPPPTPTPSVPSPTPPVPTDPMPSPPPPVSPPPPTPTPSV 192
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = -3
Query: 371 GDTFLARGEFFRLLAGERDGETLFFVCTGLVSRTL-----NLILHYE 246
GD A+ E R LAG RDG V T + +R L +L++HYE
Sbjct: 392 GDISQAQRE--RTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYE 436
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,885,898
Number of Sequences: 28952
Number of extensions: 275120
Number of successful extensions: 926
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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