Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0587
         (927 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006832-2|AAO38580.1|  366|Caenorhabditis elegans Hypothetical ...    32   0.67 
AC006832-1|AAO38581.1|  376|Caenorhabditis elegans Hypothetical ...    32   0.67 
AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ...    29   4.7  

>AC006832-2|AAO38580.1|  366|Caenorhabditis elegans Hypothetical
           protein ZK355.2a protein.
          Length = 366

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +1

Query: 178 LINCCSTRMCISCVIVVHSQLQHH*KVFSYYVIIMMLCV*ELYYGIGLNTK 330
           ++  C+  MC++ +  +H+  Q H  +F YY++ +        + IG NT+
Sbjct: 62  VLGICTAAMCMARIAKLHTTSQSHLMLFLYYILAVHCFAGSFEWLIGWNTQ 112


>AC006832-1|AAO38581.1|  376|Caenorhabditis elegans Hypothetical
           protein ZK355.2b protein.
          Length = 376

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +1

Query: 178 LINCCSTRMCISCVIVVHSQLQHH*KVFSYYVIIMMLCV*ELYYGIGLNTK 330
           ++  C+  MC++ +  +H+  Q H  +F YY++ +        + IG NT+
Sbjct: 72  VLGICTAAMCMARIAKLHTTSQSHLMLFLYYILAVHCFAGSFEWLIGWNTQ 122


>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
           protein R193.2 protein.
          Length = 1853

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +3

Query: 153 IKSYYLLYTDQLLFYS--NVHQLRNCCPLPTA 242
           I++ YL   + ++F++  N  +L NCCP PTA
Sbjct: 753 IRNGYLQNNNLVIFFARGNYEKLSNCCPDPTA 784


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,394,464
Number of Sequences: 27780
Number of extensions: 367802
Number of successful extensions: 604
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)