Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0585
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35327| Best HMM Match : Cellulase (HMM E-Value=4e-05)               31   1.0  
SB_27214| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-08)                 28   7.1  
SB_39182| Best HMM Match : Cellulase (HMM E-Value=0.00018)             27   9.4  
SB_14507| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_35327| Best HMM Match : Cellulase (HMM E-Value=4e-05)
          Length = 353

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 398 DGCGNTCSNTFSNKT--NNQYNKHIRXALLGSG 306
           DGCGN CS +    T   NQ+ K +  A+  SG
Sbjct: 157 DGCGNNCSKSLRENTAAYNQWTKDVASAIRKSG 189


>SB_27214| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-08)
          Length = 354

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +3

Query: 513 VYFSLLRIR*TFYYVSCNERKKCFLVYSIIMYS 611
           +Y+++  +    Y  SC +R+K   ++S ++Y+
Sbjct: 260 IYYAVFHLNRVIYTTSCADRRKLRFLFSFLLYA 292


>SB_39182| Best HMM Match : Cellulase (HMM E-Value=0.00018)
          Length = 949

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -3

Query: 398 DGCGNTCSNTFSNKTN--NQYNKHIRXALLGSG 306
           DGCGN CS +    T   N++ K +   +  +G
Sbjct: 155 DGCGNNCSGSLRENTTKYNEWTKEVTREIRETG 187



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -3

Query: 398 DGCGNTCSNTFSNKTN--NQYNKHIRXALLGSG 306
           DGCGN CS +    T   N++ K +   +  +G
Sbjct: 496 DGCGNNCSGSLRENTTKYNEWTKEVTREIRETG 528



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -3

Query: 398 DGCGNTCSNTFSNKTN--NQYNKHIRXALLGSG 306
           DGCGN CS +    T   N++ K +   +  +G
Sbjct: 802 DGCGNNCSGSLRENTTKYNEWTKEVTREIRETG 834


>SB_14507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = -3

Query: 404 ERDGCGNTCSNTFSNKTNNQYNKHIRXALLGSGAAPHAGGPTANDN 267
           ER   G+T SN  S+  NN   K  R   L     P A     ND+
Sbjct: 73  ERSRAGSTLSNNTSSINNNNRMKQAREVTLTIDTGPPATNYNNNDD 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,260,991
Number of Sequences: 59808
Number of extensions: 186067
Number of successful extensions: 310
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)