Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0585
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   3.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   3.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   3.2  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 386 NTCSNTFSNKTNNQYNKHIR 327
           N  +N ++N  NN YN + +
Sbjct: 95  NNYNNNYNNNYNNNYNNNYK 114



 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 386 NTCSNTFSNKTNNQYNK 336
           N  +N ++N  NN Y K
Sbjct: 99  NNYNNNYNNNYNNNYKK 115


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 386 NTCSNTFSNKTNNQYNKHIR 327
           N  +N ++N  NN YN + +
Sbjct: 95  NNYNNNYNNNYNNNYNNNYK 114



 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 386 NTCSNTFSNKTNNQYNK 336
           N  +N ++N  NN Y K
Sbjct: 99  NNYNNNYNNNYNNNYKK 115


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 386 NTCSNTFSNKTNNQYNKH 333
           N  +N ++N  NN YN +
Sbjct: 332 NNYNNNYNNYNNNNYNNY 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,161
Number of Sequences: 438
Number of extensions: 2538
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)