Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0584
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom...    27   2.1  
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    26   4.9  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    26   6.5  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   6.5  

>SPCC584.14 |mug160||conserved eukaryotic
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -1

Query: 739 LPLEPMKSSPVTALQVDVWTLLFIGDVKYLSDKSFSNPDSKSSLQALA-KFPFKSQP 572
           LP+ PM  +  TAL++ +W+L+ + D      + F    SKS ++ L+  F F S P
Sbjct: 96  LPV-PMNPAQCTALEIALWSLIRVDD-----QRLFELCHSKSGIRLLSIIFDFDSHP 146


>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 170

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 527 YGSKSYISFV-WIPSHCGIKGNEIVDRIANEAINCGDIYYFKNYS 396
           Y    +I+F+ WIP  C I G  IV+ I    ++ GD + + + S
Sbjct: 50  YARNLHITFIDWIPFLCSILGIVIVNSIDKSRLS-GDSFAYTDES 93


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/58 (18%), Positives = 27/58 (46%)
 Frame = -3

Query: 572 DLPYSLRL*KPVNEMYGSKSYISFVWIPSHCGIKGNEIVDRIANEAINCGDIYYFKNY 399
           ++P    + K   E + + S ++ +   +H G+   +++D I  +  +  D Y F  +
Sbjct: 758 EIPCKHTMSKDQIEFFKAGSALNLIREKAHSGVVNQKVIDSIKQQPDHYADAYIFNRH 815


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 186 IGVLDSSKCECGADIGDLNHIILSCPLF 103
           +G    S   C A +  LN+ I SCPLF
Sbjct: 445 LGSCPRSSDSCRAILDILNNYIFSCPLF 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,726
Number of Sequences: 5004
Number of extensions: 59786
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)