Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0584
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681... 31 0.96
04_01_0261 + 3516461-3516629,3517729-3517823,3518724-3518834,351... 30 1.7
02_05_0024 + 25152090-25153151,25153232-25154145,25154499-251547... 29 2.9
01_01_0998 - 7894254-7894515,7895133-7895270,7896049-7896246,789... 29 2.9
12_02_0507 + 19810446-19811048,19811220-19811466,19811590-198121... 28 9.0
11_06_0732 - 26740718-26741704,26741876-26742478 28 9.0
11_06_0098 - 20068488-20068616,20069039-20069257,20069431-200696... 28 9.0
10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505 28 9.0
08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149 28 9.0
07_03_0457 - 18404577-18405193,18405317-18405563,18405734-184059... 28 9.0
06_03_0228 - 18439659-18440900,18441212-18441736,18441813-184421... 28 9.0
06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515 28 9.0
05_03_0226 - 10645036-10646001,10646313-10646828,10646905-106472... 28 9.0
05_01_0180 + 1268129-1268237,1268382-1268731,1268903-1269808,127... 28 9.0
04_04_0927 + 29467121-29467168,29467518-29467604,29468180-294682... 28 9.0
04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789 28 9.0
04_03_0328 + 14440877-14441479,14441650-14441955,14442032-14442637 28 9.0
04_03_0101 - 11242252-11243295,11243607-11244131,11244208-112445... 28 9.0
>12_02_1270 +
27466516-27466621,27466722-27466885,27467385-27468173,
27468263-27468479,27469078-27469256,27470233-27470474,
27470607-27470994
Length = 694
Score = 31.1 bits (67), Expect = 0.96
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 243 KSRGFKIIFVEPWFGRNGWLYPSVIFCFNAIIPLCTPSIIQICFRK 380
+ RG ++FV FG GWL P+ + +PLCT S + K
Sbjct: 3 RRRGLLLVFVVVCFGGGGWLLPA-----SRAMPLCTDSRPPVALNK 43
>04_01_0261 +
3516461-3516629,3517729-3517823,3518724-3518834,
3519179-3519213,3519864-3519954,3520124-3520196,
3521127-3521257,3524325-3524720
Length = 366
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Frame = -1
Query: 730 EPMKSSPVTALQVDVWTLLFIGDVKYLSDKSFS-NPDSKSSLQALAKFPFKSQPIYPILL 554
EP S+ VTA+ + T+ G+ KY +D NP + +L+ FPF S P+
Sbjct: 48 EPPNSTAVTAMIATMNTMARYGN-KYGNDSVPPVNPSANPNLELCKAFPFLSVSCLPLYQ 106
Query: 553 DCRNLLMKCMDQNLTYHLYGYLAIAELKEMK*LIELQTR 437
K ++ L Y+ Y + ++ + + + TR
Sbjct: 107 YIIFKFQKLLEILLRYYCEFYRHVHTMERIVEYVTMMTR 145
>02_05_0024 +
25152090-25153151,25153232-25154145,25154499-25154709,
25154757-25154921
Length = 783
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 697 QVDVWTLLFIGDVKYLSDKSFSNPDSKSSLQALAKFPFKSQPIYP 563
+V W + + + ++ SFS P K + A +FPF+ Q + P
Sbjct: 368 RVSPWLVELVSSMPAINLSSFSPPRKKPRILAYPEFPFEGQLLNP 412
>01_01_0998 -
7894254-7894515,7895133-7895270,7896049-7896246,
7896334-7896786,7896877-7897098,7898100-7898227,
7899325-7899432
Length = 502
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 652 LSDKSFSNPDSKSSLQALAKFPFKSQPIYPILLDC 548
+ D +P + L ++A FP+ +P+Y IL DC
Sbjct: 50 MKDMMKLSPSTSQFLVSVAYFPWSIKPVYGILSDC 84
>12_02_0507 +
19810446-19811048,19811220-19811466,19811590-19812125,
19812397-19813620
Length = 869
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 362 NNAWSAQWYNGVKAKYYRR 306
N AW+ + Y +KAKY++R
Sbjct: 232 NGAWTTRGYQNLKAKYFQR 250
>11_06_0732 - 26740718-26741704,26741876-26742478
Length = 529
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 362 NNAWSAQWYNGVKAKYYRR 306
N AW+ + Y +KAKY++R
Sbjct: 232 NGAWTTRGYQNLKAKYFQR 250
>11_06_0098 -
20068488-20068616,20069039-20069257,20069431-20069606,
20069812-20070034
Length = 248
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 362 NNAWSAQWYNGVKAKYYRR 306
N AW+ + Y +KAKY++R
Sbjct: 164 NGAWTTRGYQNLKAKYFQR 182
>10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505
Length = 916
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 362 NNAWSAQWYNGVKAKYYRR 306
N AW+ + Y +KAKY++R
Sbjct: 232 NGAWTTRGYQNLKAKYFQR 250
>08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149
Length = 916
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 362 NNAWSAQWYNGVKAKYYRR 306
N AW+ + Y +KAKY++R
Sbjct: 232 NGAWTTRGYQNLKAKYFQR 250
>07_03_0457 -
18404577-18405193,18405317-18405563,18405734-18405953,
18406239-18406333
Length = 392
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 362 NNAWSAQWYNGVKAKYYRR 306
N AW+ + Y +KAKY++R
Sbjct: 136 NGAWTTRGYQNLKAKYFQR 154
>06_03_0228 -
18439659-18440900,18441212-18441736,18441813-18442118,
18442290-18442877
Length = 886
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 362 NNAWSAQWYNGVKAKYYRR 306
N AW+ + Y +KAKY++R
Sbjct: 227 NGAWTTRGYQNLKAKYFQR 245
>06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515
Length = 916
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 362 NNAWSAQWYNGVKAKYYRR 306
N AW+ + Y +KAKY++R
Sbjct: 232 NGAWTTRGYQNLKAKYFQR 250
>05_03_0226 -
10645036-10646001,10646313-10646828,10646905-10647210,
10647382-10647984
Length = 796
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 362 NNAWSAQWYNGVKAKYYRR 306
N AW+ + Y +KAKY++R
Sbjct: 232 NGAWTTRGYQNLKAKYFQR 250
>05_01_0180 +
1268129-1268237,1268382-1268731,1268903-1269808,
1270120-1271361
Length = 868
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 362 NNAWSAQWYNGVKAKYYRR 306
N AW+ + Y +KAKY++R
Sbjct: 184 NGAWTTRGYQNLKAKYFQR 202
>04_04_0927 +
29467121-29467168,29467518-29467604,29468180-29468269,
29468547-29468741,29469056-29471080,29471208-29471354,
29471520-29471923,29472015-29472144
Length = 1041
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = +3
Query: 108 GDMKE*CDLNRQCPHRTHTYCYPALRSSLDVPDYTCGLISS--VSNWKSRGFKIIFVEPW 281
G + + ++N CP + +++ +TC + S + W + + W
Sbjct: 292 GRLDQKVNVNASCPKMVESLASVHVKAVAFGSKHTCAITVSGELFEWGEGAHSLGLMNDW 351
Query: 282 FGRNGW 299
+GRN W
Sbjct: 352 YGRNQW 357
>04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789
Length = 877
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 362 NNAWSAQWYNGVKAKYYRR 306
N AW+ + Y +KAKY++R
Sbjct: 223 NGAWTTRGYQNLKAKYFQR 241
>04_03_0328 + 14440877-14441479,14441650-14441955,14442032-14442637
Length = 504
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 362 NNAWSAQWYNGVKAKYYRR 306
N AW+ + Y +KAKY++R
Sbjct: 232 NGAWTTRGYQNLKAKYFQR 250
>04_03_0101 -
11242252-11243295,11243607-11244131,11244208-11244513,
11244692-11245231
Length = 804
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 362 NNAWSAQWYNGVKAKYYRR 306
N AW+ + Y +KAKY++R
Sbjct: 211 NGAWTTRGYQNLKAKYFQR 229
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,016,949
Number of Sequences: 37544
Number of extensions: 346772
Number of successful extensions: 728
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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