Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0584
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16131| Best HMM Match : RhoGEF (HMM E-Value=2e-05)                  30   1.7  
SB_31792| Best HMM Match : DUF1373 (HMM E-Value=2.5)                   29   4.0  
SB_37784| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_36157| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-18)                 28   6.9  
SB_42950| Best HMM Match : CDC50 (HMM E-Value=0)                       28   6.9  

>SB_16131| Best HMM Match : RhoGEF (HMM E-Value=2e-05)
          Length = 520

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/67 (23%), Positives = 30/67 (44%)
 Frame = -1

Query: 727 PMKSSPVTALQVDVWTLLFIGDVKYLSDKSFSNPDSKSSLQALAKFPFKSQPIYPILLDC 548
           P   + + +LQ+  WTL   G++ Y+   + +N  +    + +   P   Q      L+C
Sbjct: 25  PKAVALLVSLQIKTWTLAQNGELVYMDPYTTNNDKNSDESEQVPLSPRPKQKEKMEALEC 84

Query: 547 RNLLMKC 527
           R+   KC
Sbjct: 85  RDEAHKC 91


>SB_31792| Best HMM Match : DUF1373 (HMM E-Value=2.5)
          Length = 696

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -1

Query: 292 FLPNHG---STNIILKPRDFQFDTDEIRPH 212
           FL NHG   S++ +  P  F  D D++RPH
Sbjct: 153 FLRNHGAKFSSSKMFSPTPFYIDVDKLRPH 182


>SB_37784| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 23/78 (29%), Positives = 33/78 (42%)
 Frame = -3

Query: 515 SYISFVWIPSHCGIKGNEIVDRIANEAINCGDIYYFKNYSHDLVSLPKTYLNNAWSAQWY 336
           +YI+FV  P H   K  E         IN   I+ F+NY H  +   K YL+    A+  
Sbjct: 118 AYITFVLEPRHTNPKARE-------GTINL--IHTFRNYLHYHIKCSKAYLHTRMRARTA 168

Query: 335 NGVKAKYYRRVQPTIPSK 282
           + +K     R +P    K
Sbjct: 169 DFIKILNRARPEPKTTEK 186


>SB_36157| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-18)
          Length = 474

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 280 GLEGMVGCTLR*YFALTPLYHCALQALF 363
           G  GMV C +  Y A+ PL  CA+  LF
Sbjct: 107 GTTGMVLCKVTNYLAVLPLVVCAITLLF 134


>SB_42950| Best HMM Match : CDC50 (HMM E-Value=0)
          Length = 394

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 449 IANEAINCGDIYYFKNYSHDLVSLPKTYLNNAWSA 345
           IAN   N    +++K  S D++ L  TY + AW +
Sbjct: 163 IANSLFNDSFKFFYKKSSSDIIPLDLTYKDIAWES 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,442,313
Number of Sequences: 59808
Number of extensions: 417343
Number of successful extensions: 1862
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1860
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)