Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0584
         (742 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.       45   1e-04
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ...    38   0.011
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros...    32   0.94 
AY118355-1|AAM48384.1|  577|Drosophila melanogaster RE01566p pro...    30   3.8  
AE014134-2762|AAF53561.2|  577|Drosophila melanogaster CG17905-P...    30   3.8  

>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
          Length = 1227

 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = -3

Query: 509  ISFVWIPSHCGIKGNEIVDRIANEAINCGDIYYFKNYSHDLVSLPKTYLNNAWSAQW 339
            I+ +W+PSH GI GNE+ D+ A E      I +    S DL S  K YL     ++W
Sbjct: 1058 ITLLWVPSHQGIHGNELADKAAQEMRLTPSILFTPFNSKDLKSRIKLYLKEKKLSEW 1114


>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
            protein.
          Length = 1219

 Score = 38.3 bits (85), Expect = 0.011
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
 Frame = -3

Query: 509  ISFVWIPSHCGIKGNEIVDRIANEA----------INCGDIYYFKNYSHDLVSLPKTYLN 360
            I  +WIP H GIKGNE+ D+ A  A          IN  DI   K+   DL +  K ++ 
Sbjct: 1043 IKIMWIPGHSGIKGNELADQAAKSASSMPLILTPNINTTDIK--KHLKADLATKQKEHII 1100

Query: 359  NAWSAQWYNGV 327
            N   + WY  +
Sbjct: 1101 NC--SPWYQSI 1109



 Score = 30.3 bits (65), Expect = 2.9
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 237  LIRMRLGHTCSPAHLATIGVLDSSKCE-CGADIGDLNHIILSCP 109
            +IR+RLGHT +  H   +       C  C  DI  LNHI  SCP
Sbjct: 1135 IIRLRLGHT-NITHQHYLNPNSIPTCPFCQGDI-SLNHIFNSCP 1176


>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
            Drosophila melanogasterDNA for type I retrotransposable
            element  R1Dm.  ).
          Length = 1021

 Score = 31.9 bits (69), Expect = 0.94
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 219  GHTCSPAHLATIGVLDSSKCECGADIGDLNHIILSCPLF 103
            GH    A L    + D++ C CG    D  HI+ +CPL+
Sbjct: 936  GHGSFNAFLHGRALSDTTACACGDPYEDWMHILCACPLY 974


>AY118355-1|AAM48384.1|  577|Drosophila melanogaster RE01566p
           protein.
          Length = 577

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +3

Query: 132 LNRQCPHRTHTYCYPALRSSLDVPDYTCGLISS 230
           +N+ CP R++   +  + + L+V +Y CG++ +
Sbjct: 405 VNQNCPSRSYPGIWELVMNQLEVGEYMCGMVDT 437


>AE014134-2762|AAF53561.2|  577|Drosophila melanogaster CG17905-PA
           protein.
          Length = 577

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +3

Query: 132 LNRQCPHRTHTYCYPALRSSLDVPDYTCGLISS 230
           +N+ CP R++   +  + + L+V +Y CG++ +
Sbjct: 405 VNQNCPSRSYPGIWELVMNQLEVGEYMCGMVDT 437


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,398,024
Number of Sequences: 53049
Number of extensions: 586698
Number of successful extensions: 1146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3355404063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)