Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0584
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49829-4|AAK68350.1|  427|Caenorhabditis elegans Dehydrogenases,...    29   2.6  
AL132860-6|CAB60526.1|  373|Caenorhabditis elegans Hypothetical ...    29   4.6  
Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical p...    28   8.0  
DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagella...    28   8.0  

>U49829-4|AAK68350.1|  427|Caenorhabditis elegans Dehydrogenases,
           short chain protein29 protein.
          Length = 427

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +1

Query: 241 GSLVALKLYL*NHGLEGMVGCTLR*YFALTPL 336
           G++ +L++ L + GLEG+   TL  YFA TP+
Sbjct: 199 GAMESLQMELRDRGLEGIKTTTLYPYFARTPM 230


>AL132860-6|CAB60526.1|  373|Caenorhabditis elegans Hypothetical
           protein Y56A3A.9 protein.
          Length = 373

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
 Frame = -2

Query: 243 SSLIRMRLGHT--CSPAHLATIGVLDSSKC-ECGADIGDLNHIILSC 112
           + L R+R GH+  C  +++A I     S C +CG+  GD+NH +L+C
Sbjct: 290 TELARLRCGHSRLCG-SYVARIENRSISPCRKCGSVEGDVNH-LLTC 334


>Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical
           protein F23B2.4 protein.
          Length = 1192

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 568 YPILLDCRNLLMKCMDQN 515
           YPILLD R   +KC+D N
Sbjct: 469 YPILLDSRKTAIKCIDIN 486


>DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagellar
           transport protein protein.
          Length = 1192

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 568 YPILLDCRNLLMKCMDQN 515
           YPILLD R   +KC+D N
Sbjct: 469 YPILLDSRKTAIKCIDIN 486


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,968,361
Number of Sequences: 27780
Number of extensions: 320532
Number of successful extensions: 821
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)