Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0584
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.2  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 685 WTLLFIGDVKYLSDKSFSNPDSKSSLQALAKFPFKSQPI 569
           +T +    +KY +D +   PD  + L  L K P K + I
Sbjct: 249 FTRVVTDTIKYRNDNNIVRPDFINMLMELQKNPQKLENI 287


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 346 HSGIMALKQNITEGYNQPFLPNHG 275
           HS I  L  N+  GY+    P+ G
Sbjct: 3   HSNISELLDNLLRGYDNSVRPDFG 26


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 601 LAKFPFKSQPIYPILLDCRNLLMKCMDQNLTYHLYGYL 488
           L  FP   Q    IL  C+ + ++ ++  +   L+GYL
Sbjct: 166 LRNFPMDRQSCPLILGSCKCIYVQSINLCMAGRLFGYL 203


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 418  ISPQLIASFAILSTISFPLIPQWLGIHTND 507
            +SP L A+  +++     +IP   GI+T D
Sbjct: 1103 MSPPLSAANGVITGYKVIVIPSGGGIYTKD 1132


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 515 SYISFVWIPSHCGIKGNEIVDRIANEAINC 426
           SY+S ++  S+ GIK  E ++ +  +   C
Sbjct: 281 SYVSIIYEESNYGIKAFEELEELLGKRNIC 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,175
Number of Sequences: 438
Number of extensions: 4061
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)